miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 21953 0.67 0.496294
Target:  5'- gGCCCUuCaCGGCCgggcagCCCCGGCgggucgagcUGGACGc -3'
miRNA:   3'- -UGGGGcG-GUUGGa-----GGGGCCG---------ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 22179 0.76 0.138351
Target:  5'- cGCCCCGgCGGCCgugugggCgCCCGaGCUGGGCGa -3'
miRNA:   3'- -UGGGGCgGUUGGa------G-GGGC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 22704 0.77 0.12855
Target:  5'- cGCCgCGCCcGCCUCCCCcGCgggGGGCGa -3'
miRNA:   3'- -UGGgGCGGuUGGAGGGGcCGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 22902 0.75 0.167917
Target:  5'- -gCCCGCCAGCCcCCCgCGGCcGGAgGg -3'
miRNA:   3'- ugGGGCGGUUGGaGGG-GCCGaCCUgC- -5'
5554 3' -63.9 NC_001806.1 + 23255 0.69 0.417875
Target:  5'- gGCCgCCGCC-GCCUCCgCCGcGCcgcgggagGGGCGc -3'
miRNA:   3'- -UGG-GGCGGuUGGAGG-GGC-CGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 23519 0.66 0.552076
Target:  5'- -gCCCGCCGAgggCCCCGaccccCUGGGCGg -3'
miRNA:   3'- ugGGGCGGUUggaGGGGCc----GACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 24506 0.68 0.451829
Target:  5'- uACCgCCggGCCGugCUgCCgGcGCUGGACGg -3'
miRNA:   3'- -UGG-GG--CGGUugGAgGGgC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 24805 0.66 0.533236
Target:  5'- gGCCCUGCCGccggcGCCgCCCgGgauucGCUGGGCc -3'
miRNA:   3'- -UGGGGCGGU-----UGGaGGGgC-----CGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 26404 0.69 0.369977
Target:  5'- cCCCCGCCGcccccgGCCgCCCgGGCccacGGGCGc -3'
miRNA:   3'- uGGGGCGGU------UGGaGGGgCCGa---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 26512 0.73 0.23338
Target:  5'- cGCCCCGCCGccGCC-CCCCG-CcGGugGg -3'
miRNA:   3'- -UGGGGCGGU--UGGaGGGGCcGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 26682 0.69 0.401491
Target:  5'- gGCCCCgGCCcccACCg-CCCGGCgUGGGCc -3'
miRNA:   3'- -UGGGG-CGGu--UGGagGGGCCG-ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 27301 0.69 0.407996
Target:  5'- gGCCCgGCCAACCagcguccgccgagUCuucggggCCCGGCccauUGGGCGg -3'
miRNA:   3'- -UGGGgCGGUUGG-------------AG-------GGGCCG----ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 27861 0.69 0.400683
Target:  5'- cGCCCCGCgGugggccuGCCUCCCCug--GGACGc -3'
miRNA:   3'- -UGGGGCGgU-------UGGAGGGGccgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 28148 0.68 0.455307
Target:  5'- -aCCCGCCGGCCUgagggccgCCCCcagcgcgaggugaggGGCcGGGCGc -3'
miRNA:   3'- ugGGGCGGUUGGA--------GGGG---------------CCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 29511 0.71 0.319026
Target:  5'- cGCCCCGCgGuACCUgaCCCUGGggGGGCa -3'
miRNA:   3'- -UGGGGCGgU-UGGA--GGGGCCgaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 29801 0.66 0.542629
Target:  5'- gGCgCCGCCGcGCC-CCCCgugacgGGCgGGGCGu -3'
miRNA:   3'- -UGgGGCGGU-UGGaGGGG------CCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 29842 0.74 0.189164
Target:  5'- aGCCCC-CCAGCCggCCgCGGCUcGGACa -3'
miRNA:   3'- -UGGGGcGGUUGGa-GGgGCCGA-CCUGc -5'
5554 3' -63.9 NC_001806.1 + 30222 0.66 0.533236
Target:  5'- cCCCCGCgCGGCCguggCCCCGuGCgu-GCGa -3'
miRNA:   3'- uGGGGCG-GUUGGa---GGGGC-CGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 30266 0.73 0.23338
Target:  5'- gGCCCgGCCc-CCgcgCCCCGGCccccgGGGCGg -3'
miRNA:   3'- -UGGGgCGGuuGGa--GGGGCCGa----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 30776 0.68 0.451829
Target:  5'- cCUCCGCUuccGCCUCCUCGgGCgGGGCc -3'
miRNA:   3'- uGGGGCGGu--UGGAGGGGC-CGaCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.