miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 31094 0.75 0.167917
Target:  5'- gACCCgGCUgcgGGCCgcggUCCCCGGCUGGAg- -3'
miRNA:   3'- -UGGGgCGG---UUGG----AGGGGCCGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 33341 0.66 0.590302
Target:  5'- cGCCCC-UUGGCCgCCCCGGCUgcagggGGGCc -3'
miRNA:   3'- -UGGGGcGGUUGGaGGGGCCGA------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 35124 0.69 0.377695
Target:  5'- gUCCCGUgGACgCggcCCUCGGUUGGGCGa -3'
miRNA:   3'- uGGGGCGgUUG-Ga--GGGGCCGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 35484 0.79 0.090784
Target:  5'- aAUUCCGCCAACCUCCuCCGGagaGGGCGa -3'
miRNA:   3'- -UGGGGCGGUUGGAGG-GGCCga-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 36416 0.68 0.450962
Target:  5'- cACCCCGCgCuuauCCUCCaguucgcguaggaCCGGCgGGugGu -3'
miRNA:   3'- -UGGGGCG-Guu--GGAGG-------------GGCCGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 41215 0.66 0.577813
Target:  5'- aGCCCCGCgCcuaaaguggcccagGGCCUCguggagCCGGCgaaaggGGACGg -3'
miRNA:   3'- -UGGGGCG-G--------------UUGGAGg-----GGCCGa-----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 41704 0.75 0.160033
Target:  5'- -gCCCGCCGuguCCUCCCCGGgaCUGG-CGg -3'
miRNA:   3'- ugGGGCGGUu--GGAGGGGCC--GACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 42392 0.66 0.580691
Target:  5'- cCCCCGC--GCC-CCCCagacGCUGGGCc -3'
miRNA:   3'- uGGGGCGguUGGaGGGGc---CGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 44693 0.66 0.553023
Target:  5'- gGCCCCGagcgcccccuccaaCCAAggaucuucgcguaucCCggCCCCGGUUGGAgGg -3'
miRNA:   3'- -UGGGGC--------------GGUU---------------GGa-GGGGCCGACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 45151 0.75 0.167917
Target:  5'- cCCCCGacCCAAgCUgUCCGGCUGGACa -3'
miRNA:   3'- uGGGGC--GGUUgGAgGGGCCGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 45299 0.66 0.590302
Target:  5'- gGCCCgCGCgGggaGCCg-CCCGGCgaggaGGGCGg -3'
miRNA:   3'- -UGGG-GCGgU---UGGagGGGCCGa----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 46374 0.69 0.369977
Target:  5'- aACCCCgacgcGCCAuggACC-CCCCGGgUGGcCGg -3'
miRNA:   3'- -UGGGG-----CGGU---UGGaGGGGCCgACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 47225 0.69 0.377695
Target:  5'- cACCCCGgCGGCC-CCCCcGCUGuACGc -3'
miRNA:   3'- -UGGGGCgGUUGGaGGGGcCGACcUGC- -5'
5554 3' -63.9 NC_001806.1 + 49144 0.69 0.417875
Target:  5'- cCCCCGC--GCCUCgCCCguGGC-GGACGa -3'
miRNA:   3'- uGGGGCGguUGGAG-GGG--CCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 50928 0.7 0.361612
Target:  5'- cGCCCCGCCu-CCUcagcgccccgggcCCCCGuGUccgGGACGg -3'
miRNA:   3'- -UGGGGCGGuuGGA-------------GGGGC-CGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 51309 0.68 0.426219
Target:  5'- gACgCCUGCCAACCugaUCCgCGGCgacaacgcGGGCGu -3'
miRNA:   3'- -UG-GGGCGGUUGG---AGGgGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 53182 0.66 0.533236
Target:  5'- uGCagCGCCGGCCUCCCCGuacaUUGaGGCGg -3'
miRNA:   3'- -UGggGCGGUUGGAGGGGCc---GAC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 55883 0.67 0.51463
Target:  5'- cGCCCCggGCCAugcccgacGCCUCCCCcucGCgagGGAuCGg -3'
miRNA:   3'- -UGGGG--CGGU--------UGGAGGGGc--CGa--CCU-GC- -5'
5554 3' -63.9 NC_001806.1 + 56832 0.69 0.377695
Target:  5'- -gCCCGCCAACaccgCCgCGGCcaGGGCGg -3'
miRNA:   3'- ugGGGCGGUUGga--GGgGCCGa-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 58979 0.67 0.505426
Target:  5'- cGCCCUGCagGACCa-CCUGGCaGGGCGc -3'
miRNA:   3'- -UGGGGCGg-UUGGagGGGCCGaCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.