miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 35124 0.69 0.377695
Target:  5'- gUCCCGUgGACgCggcCCUCGGUUGGGCGa -3'
miRNA:   3'- uGGGGCGgUUG-Ga--GGGGCCGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 148507 0.69 0.384734
Target:  5'- cGCCCUGaCGGCCUCCUCGGCcuccaugcgggucUGGGgGu -3'
miRNA:   3'- -UGGGGCgGUUGGAGGGGCCG-------------ACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 137488 0.69 0.385521
Target:  5'- cACCCUGaCCAGCaaCCCCGccucGCUGGAgGa -3'
miRNA:   3'- -UGGGGC-GGUUGgaGGGGC----CGACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 73968 0.69 0.385521
Target:  5'- gGCCCCucgGCguaauGCCcgCCCCGGCcgGGGCGg -3'
miRNA:   3'- -UGGGG---CGgu---UGGa-GGGGCCGa-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 120888 0.69 0.393454
Target:  5'- cCCCCGggGACCUugCCCCGGCcGGAUu -3'
miRNA:   3'- uGGGGCggUUGGA--GGGGCCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 81936 0.69 0.399069
Target:  5'- gGCCCCGUacGCCUCCCgggaccgccggguuCGGCgGcGACGg -3'
miRNA:   3'- -UGGGGCGguUGGAGGG--------------GCCGaC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 27861 0.69 0.400683
Target:  5'- cGCCCCGCgGugggccuGCCUCCCCug--GGACGc -3'
miRNA:   3'- -UGGGGCGgU-------UGGAGGGGccgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 17471 0.69 0.401491
Target:  5'- gUCCgGCCAACCUUCgaCGGUUGGcCGa -3'
miRNA:   3'- uGGGgCGGUUGGAGGg-GCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 26682 0.69 0.401491
Target:  5'- gGCCCCgGCCcccACCg-CCCGGCgUGGGCc -3'
miRNA:   3'- -UGGGG-CGGu--UGGagGGGCCG-ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 27301 0.69 0.407996
Target:  5'- gGCCCgGCCAACCagcguccgccgagUCuucggggCCCGGCccauUGGGCGg -3'
miRNA:   3'- -UGGGgCGGUUGG-------------AG-------GGGCCG----ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 23255 0.69 0.417875
Target:  5'- gGCCgCCGCC-GCCUCCgCCGcGCcgcgggagGGGCGc -3'
miRNA:   3'- -UGG-GGCGGuUGGAGG-GGC-CGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 49144 0.69 0.417875
Target:  5'- cCCCCGC--GCCUCgCCCguGGC-GGACGa -3'
miRNA:   3'- uGGGGCGguUGGAG-GGG--CCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 147960 0.68 0.426219
Target:  5'- aACCCCaaccCCAACCcCCCCGGagGGGCc -3'
miRNA:   3'- -UGGGGc---GGUUGGaGGGGCCgaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 132725 0.68 0.426219
Target:  5'- cCCCCGCgAGCUggCCCGGCgUGGccucgGCGg -3'
miRNA:   3'- uGGGGCGgUUGGagGGGCCG-ACC-----UGC- -5'
5554 3' -63.9 NC_001806.1 + 109394 0.68 0.426219
Target:  5'- gACCCCGCCc-CCgaCCCGGCgaugggucgugGGGCGc -3'
miRNA:   3'- -UGGGGCGGuuGGagGGGCCGa----------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 70278 0.68 0.426219
Target:  5'- aGCCCCcCCcGCC-CCCCGaGgUGGGCa -3'
miRNA:   3'- -UGGGGcGGuUGGaGGGGC-CgACCUGc -5'
5554 3' -63.9 NC_001806.1 + 51309 0.68 0.426219
Target:  5'- gACgCCUGCCAACCugaUCCgCGGCgacaacgcGGGCGu -3'
miRNA:   3'- -UG-GGGCGGUUGG---AGGgGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 21793 0.68 0.426219
Target:  5'- gGCgCCGgCAGCC-CCCgGGC-GGACGc -3'
miRNA:   3'- -UGgGGCgGUUGGaGGGgCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 96364 0.68 0.43466
Target:  5'- gUCCCGCCAugCgccagggcgcCCCCGcGCggGGGCGc -3'
miRNA:   3'- uGGGGCGGUugGa---------GGGGC-CGa-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 2706 0.68 0.443198
Target:  5'- uGCCgCCGCCAGCCgCCCagggGGUcgGGGCc -3'
miRNA:   3'- -UGG-GGCGGUUGGaGGGg---CCGa-CCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.