miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 102984 0.67 0.523901
Target:  5'- -aCCCGCCGGCUcaUCCCCGcGC-GcGGCa -3'
miRNA:   3'- ugGGGCGGUUGG--AGGGGC-CGaC-CUGc -5'
5554 3' -63.9 NC_001806.1 + 119330 0.67 0.523901
Target:  5'- gACCCC-CCcAUCUCCCCGGa-GGAg- -3'
miRNA:   3'- -UGGGGcGGuUGGAGGGGCCgaCCUgc -5'
5554 3' -63.9 NC_001806.1 + 3340 0.67 0.521113
Target:  5'- cUCCgGCCGcggggggcuggcggGCCgggCCCCGGCcagccccgGGACGg -3'
miRNA:   3'- uGGGgCGGU--------------UGGa--GGGGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 143964 0.67 0.51463
Target:  5'- cCCCCGCC--CCUgCCCCGGC--GACc -3'
miRNA:   3'- uGGGGCGGuuGGA-GGGGCCGacCUGc -5'
5554 3' -63.9 NC_001806.1 + 55883 0.67 0.51463
Target:  5'- cGCCCCggGCCAugcccgacGCCUCCCCcucGCgagGGAuCGg -3'
miRNA:   3'- -UGGGG--CGGU--------UGGAGGGGc--CGa--CCU-GC- -5'
5554 3' -63.9 NC_001806.1 + 149112 0.67 0.512784
Target:  5'- cCCCCGCCucacaaaguccuGCC-CCCCuGCUGGccuCGg -3'
miRNA:   3'- uGGGGCGGu-----------UGGaGGGGcCGACCu--GC- -5'
5554 3' -63.9 NC_001806.1 + 69102 0.67 0.505426
Target:  5'- aGCCCgCGCuCGGCCUgugcgcCCCCGG--GGACGc -3'
miRNA:   3'- -UGGG-GCG-GUUGGA------GGGGCCgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 80099 0.67 0.505426
Target:  5'- gACCCCGCCGACCccacggCCCCuGUUuuaGGcCGc -3'
miRNA:   3'- -UGGGGCGGUUGGa-----GGGGcCGA---CCuGC- -5'
5554 3' -63.9 NC_001806.1 + 105005 0.67 0.505426
Target:  5'- gGCCaaaCGCCAGCg-CCCCGGCga-GCGg -3'
miRNA:   3'- -UGGg--GCGGUUGgaGGGGCCGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 58979 0.67 0.505426
Target:  5'- cGCCCUGCagGACCa-CCUGGCaGGGCGc -3'
miRNA:   3'- -UGGGGCGg-UUGGagGGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 21953 0.67 0.496294
Target:  5'- gGCCCUuCaCGGCCgggcagCCCCGGCgggucgagcUGGACGc -3'
miRNA:   3'- -UGGGGcG-GUUGGa-----GGGGCCG---------ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 14773 0.67 0.496294
Target:  5'- cCCCCGCCccauACCcuaCCCGcGUUcGGACGg -3'
miRNA:   3'- uGGGGCGGu---UGGag-GGGC-CGA-CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 88358 0.67 0.487237
Target:  5'- gUCCCGaaGGCCaucggggCCgCCGGCUGGGCu -3'
miRNA:   3'- uGGGGCggUUGGa------GG-GGCCGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 20368 0.67 0.487237
Target:  5'- -gCCCGCCGucCCguuggUCCCGGCguccggcGGGCGg -3'
miRNA:   3'- ugGGGCGGUu-GGa----GGGGCCGa------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 132909 0.67 0.487237
Target:  5'- gGCCCUgGCCGACCUCggggggagCgGGCUGG-CGg -3'
miRNA:   3'- -UGGGG-CGGUUGGAGg-------GgCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 16935 0.67 0.478258
Target:  5'- cACCCgGgaCGGCUuugUCUCCGGCgGGACGg -3'
miRNA:   3'- -UGGGgCg-GUUGG---AGGGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 10906 0.67 0.478258
Target:  5'- uCCUCGCCGACaCUCaCCCGuCUccaGGACGu -3'
miRNA:   3'- uGGGGCGGUUG-GAG-GGGCcGA---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 143193 0.68 0.472911
Target:  5'- cGCCCCGCCGcuuuGCCccccuuugaUCCCCugcuacccccaacccGuGCUGGugGu -3'
miRNA:   3'- -UGGGGCGGU----UGG---------AGGGG---------------C-CGACCugC- -5'
5554 3' -63.9 NC_001806.1 + 119197 0.68 0.467593
Target:  5'- cGCCCCGCCGGCCgcgaaggaGGCUGcGGCc -3'
miRNA:   3'- -UGGGGCGGUUGGagggg---CCGAC-CUGc -5'
5554 3' -63.9 NC_001806.1 + 3588 0.68 0.460552
Target:  5'- uCCCCGCgGcGCCguaCCCGGC-GGGCa -3'
miRNA:   3'- uGGGGCGgU-UGGag-GGGCCGaCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.