Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5554 | 3' | -63.9 | NC_001806.1 | + | 41704 | 0.75 | 0.160033 |
Target: 5'- -gCCCGCCGuguCCUCCCCGGgaCUGG-CGg -3' miRNA: 3'- ugGGGCGGUu--GGAGGGGCC--GACCuGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 22179 | 0.76 | 0.138351 |
Target: 5'- cGCCCCGgCGGCCgugugggCgCCCGaGCUGGGCGa -3' miRNA: 3'- -UGGGGCgGUUGGa------G-GGGC-CGACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 22704 | 0.77 | 0.12855 |
Target: 5'- cGCCgCGCCcGCCUCCCCcGCgggGGGCGa -3' miRNA: 3'- -UGGgGCGGuUGGAGGGGcCGa--CCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 74877 | 0.78 | 0.102623 |
Target: 5'- gACCCUGCgGGCCUCCCUgccggcgGGCUGGuCGg -3' miRNA: 3'- -UGGGGCGgUUGGAGGGG-------CCGACCuGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 35484 | 0.79 | 0.090784 |
Target: 5'- aAUUCCGCCAACCUCCuCCGGagaGGGCGa -3' miRNA: 3'- -UGGGGCGGUUGGAGG-GGCCga-CCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 21496 | 0.74 | 0.20783 |
Target: 5'- cGCCgCCGgCGACCgggCCCCGGCccgGGGCc -3' miRNA: 3'- -UGG-GGCgGUUGGa--GGGGCCGa--CCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 101904 | 0.74 | 0.20783 |
Target: 5'- -aCCCGaCCGGCCgCCCCGcCUGGGCGu -3' miRNA: 3'- ugGGGC-GGUUGGaGGGGCcGACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 89085 | 0.7 | 0.347477 |
Target: 5'- cACCCCGgCGcGCUUCUCCGGggGGGCa -3' miRNA: 3'- -UGGGGCgGU-UGGAGGGGCCgaCCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 121387 | 0.7 | 0.340197 |
Target: 5'- uCCCCGCgaaGACCcCCCCGGagccGGGCGc -3' miRNA: 3'- uGGGGCGg--UUGGaGGGGCCga--CCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 106485 | 0.7 | 0.339475 |
Target: 5'- uCCCCGUCGGCCUCgacguggCCCGugggcauCUGGACGa -3' miRNA: 3'- uGGGGCGGUUGGAG-------GGGCc------GACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 133628 | 0.7 | 0.333028 |
Target: 5'- uGCCCC-CCAcuGCCUUCCgCGGCggcgccuugcUGGACGc -3' miRNA: 3'- -UGGGGcGGU--UGGAGGG-GCCG----------ACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 76042 | 0.7 | 0.325971 |
Target: 5'- aGCCCCugGCgCGGCUUCUgCGGCUGG-CGg -3' miRNA: 3'- -UGGGG--CG-GUUGGAGGgGCCGACCuGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 29511 | 0.71 | 0.319026 |
Target: 5'- cGCCCCGCgGuACCUgaCCCUGGggGGGCa -3' miRNA: 3'- -UGGGGCGgU-UGGA--GGGGCCgaCCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 118333 | 0.71 | 0.310164 |
Target: 5'- gGCCCCGCggagguuguaCAaaaagcucguacugGCCUUCCCGGUguuggUGGACGa -3' miRNA: 3'- -UGGGGCG----------GU--------------UGGAGGGGCCG-----ACCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 144983 | 0.71 | 0.292361 |
Target: 5'- gGCCCCgGCgGACCcaaggggCCCCGGCccgGGGCc -3' miRNA: 3'- -UGGGG-CGgUUGGa------GGGGCCGa--CCUGc -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 68218 | 0.72 | 0.255679 |
Target: 5'- cGCCaaCCGCCAACC-CCCaCGGCcGaGACGg -3' miRNA: 3'- -UGG--GGCGGUUGGaGGG-GCCGaC-CUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 26512 | 0.73 | 0.23338 |
Target: 5'- cGCCCCGCCGccGCC-CCCCG-CcGGugGg -3' miRNA: 3'- -UGGGGCGGU--UGGaGGGGCcGaCCugC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 30266 | 0.73 | 0.23338 |
Target: 5'- gGCCCgGCCc-CCgcgCCCCGGCccccgGGGCGg -3' miRNA: 3'- -UGGGgCGGuuGGa--GGGGCCGa----CCUGC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 104933 | 0.73 | 0.222341 |
Target: 5'- cAUCCCGCCGACCUUgCCCGGCacaaacaucguguUGGGgGc -3' miRNA: 3'- -UGGGGCGGUUGGAG-GGGCCG-------------ACCUgC- -5' |
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5554 | 3' | -63.9 | NC_001806.1 | + | 131884 | 0.73 | 0.211256 |
Target: 5'- cGCCCgCGCCGcgacgacgccggccGCCUCCCCG-CUGGAg- -3' miRNA: 3'- -UGGG-GCGGU--------------UGGAGGGGCcGACCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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