miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 68218 0.72 0.255679
Target:  5'- cGCCaaCCGCCAACC-CCCaCGGCcGaGACGg -3'
miRNA:   3'- -UGG--GGCGGUUGGaGGG-GCCGaC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 144983 0.71 0.292361
Target:  5'- gGCCCCgGCgGACCcaaggggCCCCGGCccgGGGCc -3'
miRNA:   3'- -UGGGG-CGgUUGGa------GGGGCCGa--CCUGc -5'
5554 3' -63.9 NC_001806.1 + 118333 0.71 0.310164
Target:  5'- gGCCCCGCggagguuguaCAaaaagcucguacugGCCUUCCCGGUguuggUGGACGa -3'
miRNA:   3'- -UGGGGCG----------GU--------------UGGAGGGGCCG-----ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 29511 0.71 0.319026
Target:  5'- cGCCCCGCgGuACCUgaCCCUGGggGGGCa -3'
miRNA:   3'- -UGGGGCGgU-UGGA--GGGGCCgaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 76042 0.7 0.325971
Target:  5'- aGCCCCugGCgCGGCUUCUgCGGCUGG-CGg -3'
miRNA:   3'- -UGGGG--CG-GUUGGAGGgGCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 133628 0.7 0.333028
Target:  5'- uGCCCC-CCAcuGCCUUCCgCGGCggcgccuugcUGGACGc -3'
miRNA:   3'- -UGGGGcGGU--UGGAGGG-GCCG----------ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 106485 0.7 0.339475
Target:  5'- uCCCCGUCGGCCUCgacguggCCCGugggcauCUGGACGa -3'
miRNA:   3'- uGGGGCGGUUGGAG-------GGGCc------GACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 121387 0.7 0.340197
Target:  5'- uCCCCGCgaaGACCcCCCCGGagccGGGCGc -3'
miRNA:   3'- uGGGGCGg--UUGGaGGGGCCga--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 89085 0.7 0.347477
Target:  5'- cACCCCGgCGcGCUUCUCCGGggGGGCa -3'
miRNA:   3'- -UGGGGCgGU-UGGAGGGGCCgaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 136626 0.7 0.35042
Target:  5'- aACaCCCGCuCGGCCaCCCCGGCgauauccgccucccGGGCGu -3'
miRNA:   3'- -UG-GGGCG-GUUGGaGGGGCCGa-------------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 73727 0.7 0.357854
Target:  5'- gGCCCCGCCGGCCaaucuguauacacgCCUCGGCgaguggcuucUGGAgCGc -3'
miRNA:   3'- -UGGGGCGGUUGGa-------------GGGGCCG----------ACCU-GC- -5'
5554 3' -63.9 NC_001806.1 + 50928 0.7 0.361612
Target:  5'- cGCCCCGCCu-CCUcagcgccccgggcCCCCGuGUccgGGACGg -3'
miRNA:   3'- -UGGGGCGGuuGGA-------------GGGGC-CGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 105728 0.7 0.362367
Target:  5'- aGCCCUGCCAuaGCCacgggCCCCgugGGUuagGGACGg -3'
miRNA:   3'- -UGGGGCGGU--UGGa----GGGG---CCGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 118768 0.7 0.362367
Target:  5'- cGCCCUgauGCgCGGCCgCCCCGGacucgGGACGg -3'
miRNA:   3'- -UGGGG---CG-GUUGGaGGGGCCga---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 116191 0.69 0.369977
Target:  5'- uUCCUGCCGACCaUCCgCCGGCaacuGACGc -3'
miRNA:   3'- uGGGGCGGUUGG-AGG-GGCCGac--CUGC- -5'
5554 3' -63.9 NC_001806.1 + 5523 0.69 0.369977
Target:  5'- gGCCCC-CCGcCC-CCCCGGC-GGGCc -3'
miRNA:   3'- -UGGGGcGGUuGGaGGGGCCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 26404 0.69 0.369977
Target:  5'- cCCCCGCCGcccccgGCCgCCCgGGCccacGGGCGc -3'
miRNA:   3'- uGGGGCGGU------UGGaGGGgCCGa---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 46374 0.69 0.369977
Target:  5'- aACCCCgacgcGCCAuggACC-CCCCGGgUGGcCGg -3'
miRNA:   3'- -UGGGG-----CGGU---UGGaGGGGCCgACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 47225 0.69 0.377695
Target:  5'- cACCCCGgCGGCC-CCCCcGCUGuACGc -3'
miRNA:   3'- -UGGGGCgGUUGGaGGGGcCGACcUGC- -5'
5554 3' -63.9 NC_001806.1 + 56832 0.69 0.377695
Target:  5'- -gCCCGCCAACaccgCCgCGGCcaGGGCGg -3'
miRNA:   3'- ugGGGCGGUUGga--GGgGCCGa-CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.