miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 119330 0.67 0.523901
Target:  5'- gACCCC-CCcAUCUCCCCGGa-GGAg- -3'
miRNA:   3'- -UGGGGcGGuUGGAGGGGCCgaCCUgc -5'
5554 3' -63.9 NC_001806.1 + 119197 0.68 0.467593
Target:  5'- cGCCCCGCCGGCCgcgaaggaGGCUGcGGCc -3'
miRNA:   3'- -UGGGGCGGUUGGagggg---CCGAC-CUGc -5'
5554 3' -63.9 NC_001806.1 + 118768 0.7 0.362367
Target:  5'- cGCCCUgauGCgCGGCCgCCCCGGacucgGGACGg -3'
miRNA:   3'- -UGGGG---CG-GUUGGaGGGGCCga---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 118333 0.71 0.310164
Target:  5'- gGCCCCGCggagguuguaCAaaaagcucguacugGCCUUCCCGGUguuggUGGACGa -3'
miRNA:   3'- -UGGGGCG----------GU--------------UGGAGGGGCCG-----ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 118112 0.66 0.571112
Target:  5'- gGCCggucgUCGCCggUCUCCCUGGcCUGGcCc -3'
miRNA:   3'- -UGG-----GGCGGuuGGAGGGGCC-GACCuGc -5'
5554 3' -63.9 NC_001806.1 + 116191 0.69 0.369977
Target:  5'- uUCCUGCCGACCaUCCgCCGGCaacuGACGc -3'
miRNA:   3'- uGGGGCGGUUGG-AGG-GGCCGac--CUGC- -5'
5554 3' -63.9 NC_001806.1 + 115212 0.66 0.590302
Target:  5'- cUUCCGCCGGCCcugcaacCCCCGG--GGACGc -3'
miRNA:   3'- uGGGGCGGUUGGa------GGGGCCgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 114197 0.66 0.533236
Target:  5'- gACCCCGCgCAcccCCUgcaCCCGGCcaaucUGGugGc -3'
miRNA:   3'- -UGGGGCG-GUu--GGAg--GGGCCG-----ACCugC- -5'
5554 3' -63.9 NC_001806.1 + 111262 0.66 0.570156
Target:  5'- cGCCuCUGCCAAuuUCUUCCUGGCacgcuuuUGGACc -3'
miRNA:   3'- -UGG-GGCGGUU--GGAGGGGCCG-------ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 109394 0.68 0.426219
Target:  5'- gACCCCGCCc-CCgaCCCGGCgaugggucgugGGGCGc -3'
miRNA:   3'- -UGGGGCGGuuGGagGGGCCGa----------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 107455 0.68 0.451829
Target:  5'- gACCaaCGCCGACCUCCggaCCGcGCUGGccCGg -3'
miRNA:   3'- -UGGg-GCGGUUGGAGG---GGC-CGACCu-GC- -5'
5554 3' -63.9 NC_001806.1 + 107347 0.66 0.571112
Target:  5'- cCUCCGgCAGCCgUUCuuGGCUGG-CGu -3'
miRNA:   3'- uGGGGCgGUUGG-AGGggCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 106749 0.66 0.551129
Target:  5'- uCCCUgacgcggGCCGACaacggCUCCGcGCUGGACGc -3'
miRNA:   3'- uGGGG-------CGGUUGga---GGGGC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 106485 0.7 0.339475
Target:  5'- uCCCCGUCGGCCUCgacguggCCCGugggcauCUGGACGa -3'
miRNA:   3'- uGGGGCGGUUGGAG-------GGGCc------GACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 106351 0.66 0.552076
Target:  5'- cGCCCCcCCGACCg--CCGGUUGGGg- -3'
miRNA:   3'- -UGGGGcGGUUGGaggGGCCGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 105728 0.7 0.362367
Target:  5'- aGCCCUGCCAuaGCCacgggCCCCgugGGUuagGGACGg -3'
miRNA:   3'- -UGGGGCGGU--UGGa----GGGG---CCGa--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 105005 0.67 0.505426
Target:  5'- gGCCaaaCGCCAGCg-CCCCGGCga-GCGg -3'
miRNA:   3'- -UGGg--GCGGUUGgaGGGGCCGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 104933 0.73 0.222341
Target:  5'- cAUCCCGCCGACCUUgCCCGGCacaaacaucguguUGGGgGc -3'
miRNA:   3'- -UGGGGCGGUUGGAG-GGGCCG-------------ACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 102984 0.67 0.523901
Target:  5'- -aCCCGCCGGCUcaUCCCCGcGC-GcGGCa -3'
miRNA:   3'- ugGGGCGGUUGG--AGGGGC-CGaC-CUGc -5'
5554 3' -63.9 NC_001806.1 + 101904 0.74 0.20783
Target:  5'- -aCCCGaCCGGCCgCCCCGcCUGGGCGu -3'
miRNA:   3'- ugGGGC-GGUUGGaGGGGCcGACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.