miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 151251 0.66 0.571112
Target:  5'- aGCCCCGCCccCCgggCCCacgccgGGC-GGugGg -3'
miRNA:   3'- -UGGGGCGGuuGGa--GGGg-----CCGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 150873 0.66 0.552076
Target:  5'- gGCUCCGCgGGCCagggCCCgGGCacGGGCc -3'
miRNA:   3'- -UGGGGCGgUUGGa---GGGgCCGa-CCUGc -5'
5554 3' -63.9 NC_001806.1 + 149112 0.67 0.512784
Target:  5'- cCCCCGCCucacaaaguccuGCC-CCCCuGCUGGccuCGg -3'
miRNA:   3'- uGGGGCGGu-----------UGGaGGGGcCGACCu--GC- -5'
5554 3' -63.9 NC_001806.1 + 148507 0.69 0.384734
Target:  5'- cGCCCUGaCGGCCUCCUCGGCcuccaugcgggucUGGGgGu -3'
miRNA:   3'- -UGGGGCgGUUGGAGGGGCCG-------------ACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 147960 0.68 0.426219
Target:  5'- aACCCCaaccCCAACCcCCCCGGagGGGCc -3'
miRNA:   3'- -UGGGGc---GGUUGGaGGGGCCgaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 144983 0.71 0.292361
Target:  5'- gGCCCCgGCgGACCcaaggggCCCCGGCccgGGGCc -3'
miRNA:   3'- -UGGGG-CGgUUGGa------GGGGCCGa--CCUGc -5'
5554 3' -63.9 NC_001806.1 + 143964 0.67 0.51463
Target:  5'- cCCCCGCC--CCUgCCCCGGC--GACc -3'
miRNA:   3'- uGGGGCGGuuGGA-GGGGCCGacCUGc -5'
5554 3' -63.9 NC_001806.1 + 143525 0.66 0.542629
Target:  5'- aACCCCGCCcACCcggCCCGGCccGGCc -3'
miRNA:   3'- -UGGGGCGGuUGGag-GGGCCGacCUGc -5'
5554 3' -63.9 NC_001806.1 + 143193 0.68 0.472911
Target:  5'- cGCCCCGCCGcuuuGCCccccuuugaUCCCCugcuacccccaacccGuGCUGGugGu -3'
miRNA:   3'- -UGGGGCGGU----UGG---------AGGGG---------------C-CGACCugC- -5'
5554 3' -63.9 NC_001806.1 + 138142 1.07 0.0009
Target:  5'- aACCCCGCCAACCUCCCCGGCUGGACGc -3'
miRNA:   3'- -UGGGGCGGUUGGAGGGGCCGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 137488 0.69 0.385521
Target:  5'- cACCCUGaCCAGCaaCCCCGccucGCUGGAgGa -3'
miRNA:   3'- -UGGGGC-GGUUGgaGGGGC----CGACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 136626 0.7 0.35042
Target:  5'- aACaCCCGCuCGGCCaCCCCGGCgauauccgccucccGGGCGu -3'
miRNA:   3'- -UG-GGGCG-GUUGGaGGGGCCGa-------------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 133628 0.7 0.333028
Target:  5'- uGCCCC-CCAcuGCCUUCCgCGGCggcgccuugcUGGACGc -3'
miRNA:   3'- -UGGGGcGGU--UGGAGGG-GCCG----------ACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 132909 0.67 0.487237
Target:  5'- gGCCCUgGCCGACCUCggggggagCgGGCUGG-CGg -3'
miRNA:   3'- -UGGGG-CGGUUGGAGg-------GgCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 132836 0.66 0.561572
Target:  5'- -aCCCGCCcgcGGCCgucgggCCCGuCUGGACGg -3'
miRNA:   3'- ugGGGCGG---UUGGag----GGGCcGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 132725 0.68 0.426219
Target:  5'- cCCCCGCgAGCUggCCCGGCgUGGccucgGCGg -3'
miRNA:   3'- uGGGGCGgUUGGagGGGCCG-ACC-----UGC- -5'
5554 3' -63.9 NC_001806.1 + 131884 0.73 0.211256
Target:  5'- cGCCCgCGCCGcgacgacgccggccGCCUCCCCG-CUGGAg- -3'
miRNA:   3'- -UGGG-GCGGU--------------UGGAGGGGCcGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 121387 0.7 0.340197
Target:  5'- uCCCCGCgaaGACCcCCCCGGagccGGGCGc -3'
miRNA:   3'- uGGGGCGg--UUGGaGGGGCCga--CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 120888 0.69 0.393454
Target:  5'- cCCCCGggGACCUugCCCCGGCcGGAUu -3'
miRNA:   3'- uGGGGCggUUGGA--GGGGCCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 119953 0.68 0.460552
Target:  5'- cGCCCCcaCCAGCUgUCUCCcGCUGGGCa -3'
miRNA:   3'- -UGGGGc-GGUUGG-AGGGGcCGACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.