miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 5' -56.8 NC_001806.1 + 83310 0.7 0.629671
Target:  5'- --cCCGCCC---CCGGAUCCcuguGGGGAGg -3'
miRNA:   3'- aaaGGCGGGaacGGCUUAGG----UCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 57352 0.7 0.629671
Target:  5'- --cCCGuCCCUgGCCGuccUCCGGGGAc -3'
miRNA:   3'- aaaGGC-GGGAaCGGCuu-AGGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 137577 0.7 0.639979
Target:  5'- ---gCGCCCUgGCCGccUCCGGGGGc -3'
miRNA:   3'- aaagGCGGGAaCGGCuuAGGUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 26635 0.69 0.681067
Target:  5'- --cCCGCCCgaGCCGGcgCCAGaGGc- -3'
miRNA:   3'- aaaGGCGGGaaCGGCUuaGGUC-CCuc -5'
5555 5' -56.8 NC_001806.1 + 70329 0.69 0.681067
Target:  5'- ---aCGCCCUgGCCGc--CCGGGGGGu -3'
miRNA:   3'- aaagGCGGGAaCGGCuuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 147676 0.69 0.701401
Target:  5'- -cUCCGCCCcggggGCCGGggCgCGGGGGc -3'
miRNA:   3'- aaAGGCGGGaa---CGGCUuaG-GUCCCUc -5'
5555 5' -56.8 NC_001806.1 + 132907 0.69 0.711484
Target:  5'- --gCgGCCCUgGCCGAccUCGGGGGGa -3'
miRNA:   3'- aaaGgCGGGAaCGGCUuaGGUCCCUC- -5'
5555 5' -56.8 NC_001806.1 + 64963 0.66 0.872351
Target:  5'- ---gCGCCCggGCCGGggGUCCcGGGGc -3'
miRNA:   3'- aaagGCGGGaaCGGCU--UAGGuCCCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.