miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 24710 0.66 0.887271
Target:  5'- -cGCGGGCCGCGgagggacuuuugcGCCcGCGCCCugcuGGa -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGcCGUGGGu---CCg -5'
5556 3' -56.7 NC_001806.1 + 79931 0.67 0.827002
Target:  5'- ------gUCGCAACCGGCacgguuuuGCCCGGGg -3'
miRNA:   3'- cuugcuuGGCGUUGGCCG--------UGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 33299 0.67 0.827002
Target:  5'- aGACcAGCgGcCGGCCGGCGCUUAGGg -3'
miRNA:   3'- cUUGcUUGgC-GUUGGCCGUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 59340 0.67 0.818524
Target:  5'- uGAGCGGGgggaagguuggcCCGC-ACCGGCGCaugCAGGg -3'
miRNA:   3'- -CUUGCUU------------GGCGuUGGCCGUGg--GUCCg -5'
5556 3' -56.7 NC_001806.1 + 100721 0.67 0.834483
Target:  5'- --gUGggUCaGCGccuccacGCCgGGCGCCCAGGUg -3'
miRNA:   3'- cuuGCuuGG-CGU-------UGG-CCGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 76310 0.67 0.833659
Target:  5'- -cGCGGugCGCAACgacccggCGGCGgccgccgagcuugUCCGGGCa -3'
miRNA:   3'- cuUGCUugGCGUUG-------GCCGU-------------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 143388 0.67 0.827002
Target:  5'- cGGCGAcaaCGCuccCCGGCGgCCGGGUc -3'
miRNA:   3'- cUUGCUug-GCGuu-GGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 94846 0.67 0.818524
Target:  5'- aGAACGAcucgguCCGCAaggagGCCGaCGCCCugcuggAGGCg -3'
miRNA:   3'- -CUUGCUu-----GGCGU-----UGGCcGUGGG------UCCG- -5'
5556 3' -56.7 NC_001806.1 + 144215 0.67 0.827002
Target:  5'- --cCGAcACCGCAgaGCCGGCGCgCGcacucacaagcGGCa -3'
miRNA:   3'- cuuGCU-UGGCGU--UGGCCGUGgGU-----------CCG- -5'
5556 3' -56.7 NC_001806.1 + 127751 0.67 0.818524
Target:  5'- cGGGCGGGCUGCcggguGCgGGC-CUguGGCg -3'
miRNA:   3'- -CUUGCUUGGCGu----UGgCCGuGGguCCG- -5'
5556 3' -56.7 NC_001806.1 + 144988 0.67 0.859092
Target:  5'- cGGCGGACC-CAAggggccCCGGC-CCgGGGCc -3'
miRNA:   3'- cUUGCUUGGcGUU------GGCCGuGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 81537 0.67 0.859092
Target:  5'- aGACGAGcCCGCGcauGCCaaGCGCCCGGacGCu -3'
miRNA:   3'- cUUGCUU-GGCGU---UGGc-CGUGGGUC--CG- -5'
5556 3' -56.7 NC_001806.1 + 122183 0.67 0.827002
Target:  5'- cGGGcCGAACCG-AACCaGCcCCgCAGGCa -3'
miRNA:   3'- -CUU-GCUUGGCgUUGGcCGuGG-GUCCG- -5'
5556 3' -56.7 NC_001806.1 + 89787 0.67 0.859092
Target:  5'- gGGAgGGGCUgggGCgGACCGGCAcgccCCCAGGa -3'
miRNA:   3'- -CUUgCUUGG---CG-UUGGCCGU----GGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 100912 0.67 0.818524
Target:  5'- -cGCGAACagcguGCGAUCGGgGugcgccucgcccCCCAGGCg -3'
miRNA:   3'- cuUGCUUGg----CGUUGGCCgU------------GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 70647 0.67 0.818524
Target:  5'- uGGgGGugUGCGacgaGCUGGCgGCCCAGGUg -3'
miRNA:   3'- cUUgCUugGCGU----UGGCCG-UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 37771 0.67 0.859092
Target:  5'- cGGGCGccuuUCGCu-CCGGgGCCgGGGCg -3'
miRNA:   3'- -CUUGCuu--GGCGuuGGCCgUGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 106330 0.67 0.823631
Target:  5'- cGAGCGGGCCGCgugauacAccgcccccccgaccGCCGGUugggGCCC-GGCg -3'
miRNA:   3'- -CUUGCUUGGCG-------U--------------UGGCCG----UGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 3592 0.67 0.830345
Target:  5'- -cGCGGcGCCGUAcCCGGCgggcaccgcgcgcucGCCCGGuGCg -3'
miRNA:   3'- cuUGCU-UGGCGUuGGCCG---------------UGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 75483 0.67 0.818524
Target:  5'- -cGCGAcGCgCGCGaccACCGGCGCgCGGGa -3'
miRNA:   3'- cuUGCU-UG-GCGU---UGGCCGUGgGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.