Results 41 - 60 of 265 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 19202 | 0.67 | 0.818524 |
Target: 5'- --gUGAGCCGCA---GGUuuACCCGGGCc -3' miRNA: 3'- cuuGCUUGGCGUuggCCG--UGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 20079 | 0.69 | 0.734727 |
Target: 5'- --cCGcAGCCGCucccgucguucguGGCCGGCGCCgucugCGGGCg -3' miRNA: 3'- cuuGC-UUGGCG-------------UUGGCCGUGG-----GUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 20173 | 0.66 | 0.873948 |
Target: 5'- --cCGGGcCCGCccccggGGCCGGCGCggagUCGGGCa -3' miRNA: 3'- cuuGCUU-GGCG------UUGGCCGUG----GGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 20460 | 0.74 | 0.449443 |
Target: 5'- --cCGAACCGgGAagUCGGgGCCCGGGCc -3' miRNA: 3'- cuuGCUUGGCgUU--GGCCgUGGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 20643 | 0.78 | 0.264622 |
Target: 5'- cAACGGGCCGCGGCCacgGGC-CCCcGGCg -3' miRNA: 3'- cUUGCUUGGCGUUGG---CCGuGGGuCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21123 | 0.66 | 0.873948 |
Target: 5'- aGAACaAGCaGCGccCCGGCucCCCGGGCc -3' miRNA: 3'- -CUUGcUUGgCGUu-GGCCGu-GGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21291 | 0.7 | 0.664956 |
Target: 5'- gGGACGGGagggcccCCGCGGCgGGCACCgAcgccGGCg -3' miRNA: 3'- -CUUGCUU-------GGCGUUGgCCGUGGgU----CCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21484 | 0.73 | 0.534875 |
Target: 5'- cGACGcAGCCGaCGccGCCGGCGaCCGGGCc -3' miRNA: 3'- cUUGC-UUGGC-GU--UGGCCGUgGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21568 | 0.69 | 0.716086 |
Target: 5'- -cACGGACCGCcugucGCC-GCGCCCGccGGCc -3' miRNA: 3'- cuUGCUUGGCGu----UGGcCGUGGGU--CCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21772 | 0.73 | 0.515322 |
Target: 5'- cGGGCGGgguccgucgAgCGCGgcGCCGGCAgccCCCGGGCg -3' miRNA: 3'- -CUUGCU---------UgGCGU--UGGCCGU---GGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21895 | 0.72 | 0.564668 |
Target: 5'- -cGCGGGCCGCAucgagcgccGCCGG-GCCCGcgcGGCg -3' miRNA: 3'- cuUGCUUGGCGU---------UGGCCgUGGGU---CCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 21949 | 0.67 | 0.851357 |
Target: 5'- -cACGGGCCcuucaCGGCCGGgcaGCCCcGGCg -3' miRNA: 3'- cuUGCUUGGc----GUUGGCCg--UGGGuCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22047 | 0.72 | 0.54475 |
Target: 5'- cGGgGAGCCGUGGcCCGGCG-CCGGGCc -3' miRNA: 3'- cUUgCUUGGCGUU-GGCCGUgGGUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22106 | 0.75 | 0.42178 |
Target: 5'- uGGGCGAcaGCCGCccgGGCCucuggggGGCGCCCgAGGCg -3' miRNA: 3'- -CUUGCU--UGGCG---UUGG-------CCGUGGG-UCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22145 | 0.7 | 0.706168 |
Target: 5'- cGGAgGAGgCGCGacGCCGGUucgagGCCuCGGGCg -3' miRNA: 3'- -CUUgCUUgGCGU--UGGCCG-----UGG-GUCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22418 | 0.66 | 0.894619 |
Target: 5'- uGGCGGccgGCCGCuucgGCUGGgGCCUGGcGCa -3' miRNA: 3'- cUUGCU---UGGCGu---UGGCCgUGGGUC-CG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22470 | 0.67 | 0.835305 |
Target: 5'- -cAUGAGCCGCcgauacGACCGcGCGCagaaGGGCu -3' miRNA: 3'- cuUGCUUGGCG------UUGGC-CGUGgg--UCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22565 | 0.69 | 0.754958 |
Target: 5'- uGACGGggGCCGCGGggagccCCGGCGCC--GGCg -3' miRNA: 3'- cUUGCU--UGGCGUU------GGCCGUGGguCCG- -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22637 | 0.69 | 0.754958 |
Target: 5'- cGGGCGAGCgCGCGguGCCcgccggguacGGCGCCgCGGGg -3' miRNA: 3'- -CUUGCUUG-GCGU--UGG----------CCGUGG-GUCCg -5' |
|||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 22767 | 0.73 | 0.534875 |
Target: 5'- cGACGAcGCCGgGcGCC-GCGCCCAGGCc -3' miRNA: 3'- cUUGCU-UGGCgU-UGGcCGUGGGUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home