miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 30835 0.66 0.643519
Target:  5'- aCCUCCCUcggcCCCCGCGCuGcuucUGGGccGCGg -3'
miRNA:   3'- cGGGGGGA----GGGGCGUGuCu---ACCC--UGC- -5'
5559 3' -62.5 NC_001806.1 + 79923 0.66 0.662962
Target:  5'- cGCCCCCggucgcaaCCgGCACGGuuuugcccgGGGGCGa -3'
miRNA:   3'- -CGGGGGgag-----GGgCGUGUCua-------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 20302 0.66 0.661992
Target:  5'- cGCCCCCUUggggcggUCCCGCccgccggccaAUGGG-GGGGCGg -3'
miRNA:   3'- -CGGGGGGA-------GGGGCG----------UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 60979 0.66 0.666842
Target:  5'- gGCCCCCC-CaCCCGCGuucuacaaggacgucCuGGccaaauucUGGGACGa -3'
miRNA:   3'- -CGGGGGGaG-GGGCGU---------------GuCU--------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 59002 0.66 0.643519
Target:  5'- gGCgCCCCCUCCuCCG-GCugcccGA-GGGACGc -3'
miRNA:   3'- -CG-GGGGGAGG-GGCgUGu----CUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 100378 0.66 0.643519
Target:  5'- aGCUCCCgUCgCCGgGCGGcgcgGGGGCc -3'
miRNA:   3'- -CGGGGGgAGgGGCgUGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 21429 0.66 0.621123
Target:  5'- cGCCgCCCCggacCCCCGCcuuucgagccgacgACGauGAcgGGGACGa -3'
miRNA:   3'- -CGG-GGGGa---GGGGCG--------------UGU--CUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 55270 0.66 0.652276
Target:  5'- gGCCCCCUccgCCCagaGCACguggggguccguuAGGUugGGGGCGc -3'
miRNA:   3'- -CGGGGGGa--GGGg--CGUG-------------UCUA--CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 46364 0.66 0.662962
Target:  5'- cGCCCCCCcaaaCCCCGaCGCgccauGGAccccccGGGugGc -3'
miRNA:   3'- -CGGGGGGa---GGGGC-GUG-----UCUa-----CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 30770 0.66 0.662962
Target:  5'- cGUCCUCCUCCgcuuCCGCcuccuCGGgcGGGGCc -3'
miRNA:   3'- -CGGGGGGAGG----GGCGu----GUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 720 0.66 0.647412
Target:  5'- gGCCCcagCCCUCCCCGgCGCgucccgcgcucccucGGggGGGuuCGg -3'
miRNA:   3'- -CGGG---GGGAGGGGC-GUG---------------UCuaCCCu-GC- -5'
5559 3' -62.5 NC_001806.1 + 140338 0.66 0.633782
Target:  5'- uGCCCCCCcCCCCuuGCGGgcGGucCa -3'
miRNA:   3'- -CGGGGGGaGGGGcgUGUCuaCCcuGc -5'
5559 3' -62.5 NC_001806.1 + 47234 0.66 0.633782
Target:  5'- gGCCCCCC-CgCUGUACGcaacGGGGCGc -3'
miRNA:   3'- -CGGGGGGaGgGGCGUGUcua-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 73963 0.66 0.653248
Target:  5'- cGCCgggCCCCUCggcguaaugCCCGCccCGGccGGGGCGg -3'
miRNA:   3'- -CGG---GGGGAG---------GGGCGu-GUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 5060 0.66 0.633782
Target:  5'- gGCCCCCCg-CUCGuCGCGGucugggcucgGGGugGg -3'
miRNA:   3'- -CGGGGGGagGGGC-GUGUCua--------CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 41354 0.66 0.653248
Target:  5'- uGCCCCCCggcaUCCaggCCGC-CAG--GGGGCa -3'
miRNA:   3'- -CGGGGGG----AGG---GGCGuGUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 23782 0.66 0.624044
Target:  5'- -aCCCCCaCCCC-CACGGGgccgccgGGGGCc -3'
miRNA:   3'- cgGGGGGaGGGGcGUGUCUa------CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 115820 0.66 0.662962
Target:  5'- cGCCCCCUuugUCCCCGCcgACAagccgcgauuccGA-GGGcCGg -3'
miRNA:   3'- -CGGGGGG---AGGGGCG--UGU------------CUaCCCuGC- -5'
5559 3' -62.5 NC_001806.1 + 22070 0.66 0.63086
Target:  5'- gGCCCCCgC-CCCCgGgGCGGGUGcuguacggcggccuGGGCGa -3'
miRNA:   3'- -CGGGGG-GaGGGG-CgUGUCUAC--------------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 26888 0.66 0.624044
Target:  5'- -aCCCCCgcgacCCCCGCGCGGGUGcG-Cu -3'
miRNA:   3'- cgGGGGGa----GGGGCGUGUCUACcCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.