miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 79923 0.66 0.662962
Target:  5'- cGCCCCCggucgcaaCCgGCACGGuuuugcccgGGGGCGa -3'
miRNA:   3'- -CGGGGGgag-----GGgCGUGUCua-------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 33341 0.67 0.575564
Target:  5'- cGCCCCUUggccgCCCCgGCuGCAGG-GGGGCc -3'
miRNA:   3'- -CGGGGGGa----GGGG-CG-UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 123940 0.67 0.60459
Target:  5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3'
miRNA:   3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 51008 0.67 0.60459
Target:  5'- cCCCCCCgcCCCCGUaaGCGGcgGGucCGu -3'
miRNA:   3'- cGGGGGGa-GGGGCG--UGUCuaCCcuGC- -5'
5559 3' -62.5 NC_001806.1 + 23529 0.67 0.60459
Target:  5'- gGCCCCgaCC-CCCUGgGCGGcUGGcGGCGg -3'
miRNA:   3'- -CGGGG--GGaGGGGCgUGUCuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 144595 0.67 0.60459
Target:  5'- gGCUCUCCgggCCCCccuGCAGccGGGGCGg -3'
miRNA:   3'- -CGGGGGGa--GGGGcg-UGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 143228 0.67 0.585211
Target:  5'- -aCCCCCaaCCCGUGCuGGUGGuGCGg -3'
miRNA:   3'- cgGGGGGagGGGCGUGuCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 5910 0.67 0.563079
Target:  5'- cGCCCgCCUUgCCGCccccccauuggccgGCGGgcGGGACc -3'
miRNA:   3'- -CGGGgGGAGgGGCG--------------UGUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 27873 0.67 0.556386
Target:  5'- gGCCUgCCUCCCCugggacGCGCGGccauUGGGGg- -3'
miRNA:   3'- -CGGGgGGAGGGG------CGUGUCu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 44114 0.67 0.575564
Target:  5'- -aCCCCCggUCCCGCGCucgcucGggGGGGCc -3'
miRNA:   3'- cgGGGGGa-GGGGCGUGu-----CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 45548 0.67 0.584245
Target:  5'- uUCCCCUUCCUCGC--GGAaaccgagaccguuUGGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGCGugUCU-------------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 67365 0.67 0.584245
Target:  5'- gGCCgCCC-CCCCGCGCAuGGUGccccgcaGGAUc -3'
miRNA:   3'- -CGGgGGGaGGGGCGUGU-CUAC-------CCUGc -5'
5559 3' -62.5 NC_001806.1 + 114486 0.67 0.585211
Target:  5'- -aCCCCCUCCCCGUcCAcgcgcuguucGccGGGGCc -3'
miRNA:   3'- cgGGGGGAGGGGCGuGU----------CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 22901 0.68 0.518635
Target:  5'- gGCCCgCCagccCCCCGCGgcCGGA-GGGACc -3'
miRNA:   3'- -CGGGgGGa---GGGGCGU--GUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 38699 0.68 0.490092
Target:  5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3'
miRNA:   3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5'
5559 3' -62.5 NC_001806.1 + 144314 0.68 0.527985
Target:  5'- aCCCCCC-CCCCGCcCGuGUGGGu-- -3'
miRNA:   3'- cGGGGGGaGGGGCGuGUcUACCCugc -5'
5559 3' -62.5 NC_001806.1 + 30171 0.68 0.527047
Target:  5'- cGCCCCCCgCCCCGggccccccgcgucCGCGGccgcGUcGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGC-------------GUGUC----UA-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 90817 0.68 0.500139
Target:  5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3'
miRNA:   3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 95868 0.68 0.550667
Target:  5'- aGCCCCCCaaCaCCGCGCuguauuacagcgucgAGAacgUGGGGCu -3'
miRNA:   3'- -CGGGGGGagG-GGCGUG---------------UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 147364 0.68 0.508428
Target:  5'- cGCCcucuuggCCCCUgCCgGCGCgaGGggGGGACGc -3'
miRNA:   3'- -CGG-------GGGGAgGGgCGUG--UCuaCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.