miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 5850 0.71 0.357332
Target:  5'- gGCCCCCCggUCCCGCccgcCGGAcgccGGGACc -3'
miRNA:   3'- -CGGGGGGa-GGGGCGu---GUCUa---CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 2974 0.7 0.388301
Target:  5'- uGCgCCCCUCCCgCgGCGCGGGgaGGcGGCGg -3'
miRNA:   3'- -CGgGGGGAGGG-G-CGUGUCUa-CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83888 0.7 0.396314
Target:  5'- cGCCCgUCUCCuggaCUGCACGGAgggucggcgcgGGGGCGg -3'
miRNA:   3'- -CGGGgGGAGG----GGCGUGUCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 106351 0.7 0.404432
Target:  5'- cGCCCCCCcgaCCGC-CGGuUGGGGCc -3'
miRNA:   3'- -CGGGGGGaggGGCGuGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 103687 0.7 0.404432
Target:  5'- cCCCCCCgccCUCCGUGgAGGUGGGGg- -3'
miRNA:   3'- cGGGGGGa--GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 14113 0.7 0.404432
Target:  5'- uGCCCCCCcauccCCCUGC-CGGAcaugguuuggGGGGCGc -3'
miRNA:   3'- -CGGGGGGa----GGGGCGuGUCUa---------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 20160 0.7 0.407709
Target:  5'- cGCCCCCCgccgcccgggcccgCCCCcggggccgGCGCGGAgucGGGcACGg -3'
miRNA:   3'- -CGGGGGGa-------------GGGG--------CGUGUCUa--CCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 28815 0.7 0.42098
Target:  5'- uCCCCCCUCuUCCGaggccaGCAGG-GGGGCa -3'
miRNA:   3'- cGGGGGGAG-GGGCg-----UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 151129 0.7 0.429406
Target:  5'- gGCgCCCCCUCCCCGCccgcgcgucGCAGGcgcaGGcGCGc -3'
miRNA:   3'- -CG-GGGGGAGGGGCG---------UGUCUa---CCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 83242 0.69 0.43793
Target:  5'- -gCCCCCUCaagggCCCGCGgGGggGcGGGCGa -3'
miRNA:   3'- cgGGGGGAG-----GGGCGUgUCuaC-CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 126796 0.69 0.43793
Target:  5'- uGCCCCCCcCaCCCGCAUc--UGGuGACGu -3'
miRNA:   3'- -CGGGGGGaG-GGGCGUGucuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 121771 0.69 0.441367
Target:  5'- gGCCCCCCgccgUCCuuGCAUcacggaccgucugcaAGAggucgucggGGGACGg -3'
miRNA:   3'- -CGGGGGG----AGGggCGUG---------------UCUa--------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 106895 0.69 0.455265
Target:  5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3'
miRNA:   3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 72810 0.69 0.455265
Target:  5'- cGCCCCCaagacCCCCGcCGCAGA-GGcGGCc -3'
miRNA:   3'- -CGGGGGga---GGGGC-GUGUCUaCC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 146654 0.69 0.455265
Target:  5'- cGCCCCCugCUCCCCGgacCACGGGUGccgaGACc -3'
miRNA:   3'- -CGGGGG--GAGGGGC---GUGUCUACc---CUGc -5'
5559 3' -62.5 NC_001806.1 + 147326 0.69 0.46407
Target:  5'- cGCCCCCCcggCCCUGaguCGGA-GGGGgGg -3'
miRNA:   3'- -CGGGGGGa--GGGGCgu-GUCUaCCCUgC- -5'
5559 3' -62.5 NC_001806.1 + 115919 0.69 0.46407
Target:  5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3'
miRNA:   3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 120297 0.69 0.472963
Target:  5'- uGCCCuggCCgUCCUgGCACAccuGggGGGACGg -3'
miRNA:   3'- -CGGG---GGgAGGGgCGUGU---CuaCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.