miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 23782 0.66 0.624044
Target:  5'- -aCCCCCaCCCC-CACGGGgccgccgGGGGCc -3'
miRNA:   3'- cgGGGGGaGGGGcGUGUCUa------CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 26512 0.66 0.643519
Target:  5'- cGCCCCgCCgccgCCCCcCGCcGGUGGGcCc -3'
miRNA:   3'- -CGGGG-GGa---GGGGcGUGuCUACCCuGc -5'
5559 3' -62.5 NC_001806.1 + 26688 0.68 0.518635
Target:  5'- gGCCCCCaccgCCCgGCGUGGGcccggGGGGCGg -3'
miRNA:   3'- -CGGGGGga--GGGgCGUGUCUa----CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 26888 0.66 0.624044
Target:  5'- -aCCCCCgcgacCCCCGCGCGGGUGcG-Cu -3'
miRNA:   3'- cgGGGGGa----GGGGCGUGUCUACcCuGc -5'
5559 3' -62.5 NC_001806.1 + 27873 0.67 0.556386
Target:  5'- gGCCUgCCUCCCCugggacGCGCGGccauUGGGGg- -3'
miRNA:   3'- -CGGGgGGAGGGG------CGUGUCu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 28815 0.7 0.42098
Target:  5'- uCCCCCCUCuUCCGaggccaGCAGG-GGGGCa -3'
miRNA:   3'- cGGGGGGAG-GGGCg-----UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 29152 0.68 0.489183
Target:  5'- aGCCCCCCccgcgaggaagaCCCCG-GCAGuugcgGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-----------GGGGCgUGUCua---CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 29785 0.68 0.507504
Target:  5'- cGCCCCCCcacgcagaggcgCCgCCGCGCcccccgugacGGgcGGGGCGu -3'
miRNA:   3'- -CGGGGGGa-----------GG-GGCGUG----------UCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 30171 0.68 0.527047
Target:  5'- cGCCCCCCgCCCCGggccccccgcgucCGCGGccgcGUcGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGC-------------GUGUC----UA-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30482 0.74 0.245651
Target:  5'- cGCUCCCCUCCgCCGCcucugucgaGCAGGaGGcGGCGg -3'
miRNA:   3'- -CGGGGGGAGG-GGCG---------UGUCUaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 30577 0.69 0.472963
Target:  5'- cGUCCCCC-CCUCGCGCcGGcaGGGGCc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUa-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30620 0.68 0.518635
Target:  5'- aCCCCCC-CUCCGacuCAGGgccgggGGGGCGc -3'
miRNA:   3'- cGGGGGGaGGGGCgu-GUCUa-----CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 30770 0.66 0.662962
Target:  5'- cGUCCUCCUCCgcuuCCGCcuccuCGGgcGGGGCc -3'
miRNA:   3'- -CGGGGGGAGG----GGCGu----GUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30835 0.66 0.643519
Target:  5'- aCCUCCCUcggcCCCCGCGCuGcuucUGGGccGCGg -3'
miRNA:   3'- cGGGGGGA----GGGGCGUGuCu---ACCC--UGC- -5'
5559 3' -62.5 NC_001806.1 + 31168 0.68 0.541177
Target:  5'- uGCCCCCCgaguacccgacggcCCCCGCGuCGGAgUGGaACa -3'
miRNA:   3'- -CGGGGGGa-------------GGGGCGU-GUCU-ACCcUGc -5'
5559 3' -62.5 NC_001806.1 + 33341 0.67 0.575564
Target:  5'- cGCCCCUUggccgCCCCgGCuGCAGG-GGGGCc -3'
miRNA:   3'- -CGGGGGGa----GGGG-CG-UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 37587 0.68 0.527985
Target:  5'- gGCCCUCCUUggCCCGC-CAGcaccGGGGCc -3'
miRNA:   3'- -CGGGGGGAG--GGGCGuGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 38699 0.68 0.490092
Target:  5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3'
miRNA:   3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5'
5559 3' -62.5 NC_001806.1 + 41354 0.66 0.653248
Target:  5'- uGCCCCCCggcaUCCaggCCGC-CAG--GGGGCa -3'
miRNA:   3'- -CGGGGGG----AGG---GGCGuGUCuaCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.