miRNA display CGI


Results 41 - 60 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 44114 0.67 0.575564
Target:  5'- -aCCCCCggUCCCGCGCucgcucGggGGGGCc -3'
miRNA:   3'- cgGGGGGa-GGGGCGUGu-----CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 45548 0.67 0.584245
Target:  5'- uUCCCCUUCCUCGC--GGAaaccgagaccguuUGGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGCGugUCU-------------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 46175 0.76 0.164512
Target:  5'- cGCCCCCCgggccCCCCGaacccaGCGGGUGGcGACu -3'
miRNA:   3'- -CGGGGGGa----GGGGCg-----UGUCUACC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 46364 0.66 0.662962
Target:  5'- cGCCCCCCcaaaCCCCGaCGCgccauGGAccccccGGGugGc -3'
miRNA:   3'- -CGGGGGGa---GGGGC-GUG-----UCUa-----CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47234 0.66 0.633782
Target:  5'- gGCCCCCC-CgCUGUACGcaacGGGGCGc -3'
miRNA:   3'- -CGGGGGGaGgGGCGUGUcua-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 50928 0.68 0.537396
Target:  5'- cGCCCCgCCUCCUCaGCGCcccGGGcccccguguccGGGACGg -3'
miRNA:   3'- -CGGGG-GGAGGGG-CGUG---UCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 51008 0.67 0.60459
Target:  5'- cCCCCCCgcCCCCGUaaGCGGcgGGucCGu -3'
miRNA:   3'- cGGGGGGa-GGGGCG--UGUCuaCCcuGC- -5'
5559 3' -62.5 NC_001806.1 + 55270 0.66 0.652276
Target:  5'- gGCCCCCUccgCCCagaGCACguggggguccguuAGGUugGGGGCGc -3'
miRNA:   3'- -CGGGGGGa--GGGg--CGUG-------------UCUA--CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 57891 0.73 0.263025
Target:  5'- cGCCCCCCgagcgcCCCCGCuuGGucGUGGGAg- -3'
miRNA:   3'- -CGGGGGGa-----GGGGCGugUC--UACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 59002 0.66 0.643519
Target:  5'- gGCgCCCCCUCCuCCG-GCugcccGA-GGGACGc -3'
miRNA:   3'- -CG-GGGGGAGG-GGCgUGu----CUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 60979 0.66 0.666842
Target:  5'- gGCCCCCC-CaCCCGCGuucuacaaggacgucCuGGccaaauucUGGGACGa -3'
miRNA:   3'- -CGGGGGGaG-GGGCGU---------------GuCU--------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 67365 0.67 0.584245
Target:  5'- gGCCgCCC-CCCCGCGCAuGGUGccccgcaGGAUc -3'
miRNA:   3'- -CGGgGGGaGGGGCGUGU-CUAC-------CCUGc -5'
5559 3' -62.5 NC_001806.1 + 70278 0.68 0.509352
Target:  5'- aGCCCCCCccgCCCCcCG-AGGUGGGcACc -3'
miRNA:   3'- -CGGGGGGa--GGGGcGUgUCUACCC-UGc -5'
5559 3' -62.5 NC_001806.1 + 72810 0.69 0.455265
Target:  5'- cGCCCCCaagacCCCCGcCGCAGA-GGcGGCc -3'
miRNA:   3'- -CGGGGGga---GGGGC-GUGUCUaCC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 73963 0.66 0.653248
Target:  5'- cGCCgggCCCCUCggcguaaugCCCGCccCGGccGGGGCGg -3'
miRNA:   3'- -CGG---GGGGAG---------GGGCGu-GUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 79923 0.66 0.662962
Target:  5'- cGCCCCCggucgcaaCCgGCACGGuuuugcccgGGGGCGa -3'
miRNA:   3'- -CGGGGGgag-----GGgCGUGUCua-------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 82434 0.84 0.054531
Target:  5'- cGCCuCCCCguccccgCCCCGCAacgUAGAUGGGACGa -3'
miRNA:   3'- -CGG-GGGGa------GGGGCGU---GUCUACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83242 0.69 0.43793
Target:  5'- -gCCCCCUCaagggCCCGCGgGGggGcGGGCGa -3'
miRNA:   3'- cgGGGGGAG-----GGGCGUgUCuaC-CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83312 0.72 0.335268
Target:  5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3'
miRNA:   3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.