miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 146595 0.75 0.213764
Target:  5'- cCCCCCCUCCCCacaaaCACGG--GGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGc----GUGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 120825 0.75 0.213764
Target:  5'- uGCCCUCC-CCCCGCccccggcauggcGCAGcUGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGCG------------UGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 46175 0.76 0.164512
Target:  5'- cGCCCCCCgggccCCCCGaacccaGCGGGUGGcGACu -3'
miRNA:   3'- -CGGGGGGa----GGGGCg-----UGUCUACC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 22709 0.78 0.128843
Target:  5'- cGCCCgCCUCCCC-CGCGGggGGcGACGa -3'
miRNA:   3'- -CGGGgGGAGGGGcGUGUCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 82434 0.84 0.054531
Target:  5'- cGCCuCCCCguccccgCCCCGCAacgUAGAUGGGACGa -3'
miRNA:   3'- -CGG-GGGGa------GGGGCGU---GUCUACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 23258 0.72 0.29418
Target:  5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3'
miRNA:   3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 20586 0.72 0.307425
Target:  5'- cGCCCUCgCgCCCCGCccaugGCAGAUGGcGCGg -3'
miRNA:   3'- -CGGGGG-GaGGGGCG-----UGUCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 20160 0.7 0.407709
Target:  5'- cGCCCCCCgccgcccgggcccgCCCCcggggccgGCGCGGAgucGGGcACGg -3'
miRNA:   3'- -CGGGGGGa-------------GGGG--------CGUGUCUa--CCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 106351 0.7 0.404432
Target:  5'- cGCCCCCCcgaCCGC-CGGuUGGGGCc -3'
miRNA:   3'- -CGGGGGGaggGGCGuGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 103687 0.7 0.404432
Target:  5'- cCCCCCCgccCUCCGUGgAGGUGGGGg- -3'
miRNA:   3'- cGGGGGGa--GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 14113 0.7 0.404432
Target:  5'- uGCCCCCCcauccCCCUGC-CGGAcaugguuuggGGGGCGc -3'
miRNA:   3'- -CGGGGGGa----GGGGCGuGUCUa---------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83888 0.7 0.396314
Target:  5'- cGCCCgUCUCCuggaCUGCACGGAgggucggcgcgGGGGCGg -3'
miRNA:   3'- -CGGGgGGAGG----GGCGUGUCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 2974 0.7 0.388301
Target:  5'- uGCgCCCCUCCCgCgGCGCGGGgaGGcGGCGg -3'
miRNA:   3'- -CGgGGGGAGGG-G-CGUGUCUa-CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 5850 0.71 0.357332
Target:  5'- gGCCCCCCggUCCCGCccgcCGGAcgccGGGACc -3'
miRNA:   3'- -CGGGGGGa-GGGGCGu---GUCUa---CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20756 0.71 0.349866
Target:  5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3'
miRNA:   3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 83312 0.72 0.335268
Target:  5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3'
miRNA:   3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 17665 0.72 0.335268
Target:  5'- aGCCCCCCUCgCCUcuacCACuuGUGGGugGu -3'
miRNA:   3'- -CGGGGGGAG-GGGc---GUGucUACCCugC- -5'
5559 3' -62.5 NC_001806.1 + 151256 0.72 0.307425
Target:  5'- cGCCCCCCgggCCCaCGC-CGGGcggugGGGGCc -3'
miRNA:   3'- -CGGGGGGa--GGG-GCGuGUCUa----CCCUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.