miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 37587 0.68 0.527985
Target:  5'- gGCCCUCCUUggCCCGC-CAGcaccGGGGCc -3'
miRNA:   3'- -CGGGGGGAG--GGGCGuGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 50928 0.68 0.537396
Target:  5'- cGCCCCgCCUCCUCaGCGCcccGGGcccccguguccGGGACGg -3'
miRNA:   3'- -CGGGG-GGAGGGG-CGUG---UCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 31168 0.68 0.541177
Target:  5'- uGCCCCCCgaguacccgacggcCCCCGCGuCGGAgUGGaACa -3'
miRNA:   3'- -CGGGGGGa-------------GGGGCGU-GUCU-ACCcUGc -5'
5559 3' -62.5 NC_001806.1 + 110641 0.68 0.546865
Target:  5'- uCCCCaCCUCCaCCGCACAccccauGAccaugcGGGAUGa -3'
miRNA:   3'- cGGGG-GGAGG-GGCGUGU------CUa-----CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 95868 0.68 0.550667
Target:  5'- aGCCCCCCaaCaCCGCGCuguauuacagcgucgAGAacgUGGGGCu -3'
miRNA:   3'- -CGGGGGGagG-GGCGUG---------------UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 29785 0.68 0.507504
Target:  5'- cGCCCCCCcacgcagaggcgCCgCCGCGCcccccgugacGGgcGGGGCGu -3'
miRNA:   3'- -CGGGGGGa-----------GG-GGCGUG----------UCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 90817 0.68 0.500139
Target:  5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3'
miRNA:   3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 18247 0.68 0.500139
Target:  5'- uCCgCCCUUCCCGCcauuaAGAcgcUGGGACa -3'
miRNA:   3'- cGGgGGGAGGGGCGug---UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 132767 0.68 0.491001
Target:  5'- -gCCUCCUgCCCGCGguGcgGGaGGCGg -3'
miRNA:   3'- cgGGGGGAgGGGCGUguCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 38699 0.68 0.490092
Target:  5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3'
miRNA:   3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5'
5559 3' -62.5 NC_001806.1 + 29152 0.68 0.489183
Target:  5'- aGCCCCCCccgcgaggaagaCCCCG-GCAGuugcgGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-----------GGGGCgUGUCua---CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 146654 0.69 0.455265
Target:  5'- cGCCCCCugCUCCCCGgacCACGGGUGccgaGACc -3'
miRNA:   3'- -CGGGGG--GAGGGGC---GUGUCUACc---CUGc -5'
5559 3' -62.5 NC_001806.1 + 126796 0.69 0.43793
Target:  5'- uGCCCCCCcCaCCCGCAUc--UGGuGACGu -3'
miRNA:   3'- -CGGGGGGaG-GGGCGUGucuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 83242 0.69 0.43793
Target:  5'- -gCCCCCUCaagggCCCGCGgGGggGcGGGCGa -3'
miRNA:   3'- cgGGGGGAG-----GGGCGUgUCuaC-CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 121771 0.69 0.441367
Target:  5'- gGCCCCCCgccgUCCuuGCAUcacggaccgucugcaAGAggucgucggGGGACGg -3'
miRNA:   3'- -CGGGGGG----AGGggCGUG---------------UCUa--------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 106895 0.69 0.455265
Target:  5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3'
miRNA:   3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 72810 0.69 0.455265
Target:  5'- cGCCCCCaagacCCCCGcCGCAGA-GGcGGCc -3'
miRNA:   3'- -CGGGGGga---GGGGC-GUGUCUaCC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 147326 0.69 0.46407
Target:  5'- cGCCCCCCcggCCCUGaguCGGA-GGGGgGg -3'
miRNA:   3'- -CGGGGGGa--GGGGCgu-GUCUaCCCUgC- -5'
5559 3' -62.5 NC_001806.1 + 115919 0.69 0.46407
Target:  5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3'
miRNA:   3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 30577 0.69 0.472963
Target:  5'- cGUCCCCC-CCUCGCGCcGGcaGGGGCc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUa-CCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.