miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 140338 0.66 0.633782
Target:  5'- uGCCCCCCcCCCCuuGCGGgcGGucCa -3'
miRNA:   3'- -CGGGGGGaGGGGcgUGUCuaCCcuGc -5'
5559 3' -62.5 NC_001806.1 + 22070 0.66 0.63086
Target:  5'- gGCCCCCgC-CCCCgGgGCGGGUGcuguacggcggccuGGGCGa -3'
miRNA:   3'- -CGGGGG-GaGGGG-CgUGUCUAC--------------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 26888 0.66 0.624044
Target:  5'- -aCCCCCgcgacCCCCGCGCGGGUGcG-Cu -3'
miRNA:   3'- cgGGGGGa----GGGGCGUGUCUACcCuGc -5'
5559 3' -62.5 NC_001806.1 + 23782 0.66 0.624044
Target:  5'- -aCCCCCaCCCC-CACGGGgccgccgGGGGCc -3'
miRNA:   3'- cgGGGGGaGGGGcGUGUCUa------CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 21429 0.66 0.621123
Target:  5'- cGCCgCCCCggacCCCCGCcuuucgagccgacgACGauGAcgGGGACGa -3'
miRNA:   3'- -CGG-GGGGa---GGGGCG--------------UGU--CUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 123940 0.67 0.60459
Target:  5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3'
miRNA:   3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 57891 0.73 0.263025
Target:  5'- cGCCCCCCgagcgcCCCCGCuuGGucGUGGGAg- -3'
miRNA:   3'- -CGGGGGGa-----GGGGCGugUC--UACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 2974 0.7 0.388301
Target:  5'- uGCgCCCCUCCCgCgGCGCGGGgaGGcGGCGg -3'
miRNA:   3'- -CGgGGGGAGGG-G-CGUGUCUa-CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 5850 0.71 0.357332
Target:  5'- gGCCCCCCggUCCCGCccgcCGGAcgccGGGACc -3'
miRNA:   3'- -CGGGGGGa-GGGGCGu---GUCUa---CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20756 0.71 0.349866
Target:  5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3'
miRNA:   3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 83312 0.72 0.335268
Target:  5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3'
miRNA:   3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 17665 0.72 0.335268
Target:  5'- aGCCCCCCUCgCCUcuacCACuuGUGGGugGu -3'
miRNA:   3'- -CGGGGGGAG-GGGc---GUGucUACCCugC- -5'
5559 3' -62.5 NC_001806.1 + 151256 0.72 0.307425
Target:  5'- cGCCCCCCgggCCCaCGC-CGGGcggugGGGGCc -3'
miRNA:   3'- -CGGGGGGa--GGG-GCGuGUCUa----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20586 0.72 0.307425
Target:  5'- cGCCCUCgCgCCCCGCccaugGCAGAUGGcGCGg -3'
miRNA:   3'- -CGGGGG-GaGGGGCG-----UGUCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 23258 0.72 0.29418
Target:  5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3'
miRNA:   3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 2455 0.73 0.287726
Target:  5'- gGCCCCCggcggCCCCGUGgGGGUGGGGg- -3'
miRNA:   3'- -CGGGGGga---GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 149785 0.73 0.275154
Target:  5'- gGCCCCUCaCCUCGCGCug--GGGGCGg -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGucuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 109386 0.73 0.26243
Target:  5'- cGCCCCCCgaCCCCGCccccgacccggcgAUGGGucgUGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-GGGGCG-------------UGUCU---ACCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.