miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 23393 0.74 0.249618
Target:  5'- cGCCCCCCUCCCCGCGCccgcgccccccuccAcgcccccGGGGCc -3'
miRNA:   3'- -CGGGGGGAGGGGCGUG--------------Ucua----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30482 0.74 0.245651
Target:  5'- cGCUCCCCUCCgCCGCcucugucgaGCAGGaGGcGGCGg -3'
miRNA:   3'- -CGGGGGGAGG-GGCG---------UGUCUaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 146530 0.74 0.234063
Target:  5'- uUUCCCCUCCCCGaCACGGAuuggcugguguagUGGGcGCGg -3'
miRNA:   3'- cGGGGGGAGGGGC-GUGUCU-------------ACCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 144341 0.74 0.223978
Target:  5'- gGCCCCCCgCCCCGCGCcGGUccauuaaGGGCGc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUAc------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 146595 0.75 0.213764
Target:  5'- cCCCCCCUCCCCacaaaCACGG--GGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGc----GUGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 120825 0.75 0.213764
Target:  5'- uGCCCUCC-CCCCGCccccggcauggcGCAGcUGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGCG------------UGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 46175 0.76 0.164512
Target:  5'- cGCCCCCCgggccCCCCGaacccaGCGGGUGGcGACu -3'
miRNA:   3'- -CGGGGGGa----GGGGCg-----UGUCUACC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 22709 0.78 0.128843
Target:  5'- cGCCCgCCUCCCC-CGCGGggGGcGACGa -3'
miRNA:   3'- -CGGGgGGAGGGGcGUGUCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 82434 0.84 0.054531
Target:  5'- cGCCuCCCCguccccgCCCCGCAacgUAGAUGGGACGa -3'
miRNA:   3'- -CGG-GGGGa------GGGGCGU---GUCUACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 106895 0.69 0.455265
Target:  5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3'
miRNA:   3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 90817 0.68 0.500139
Target:  5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3'
miRNA:   3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 18247 0.68 0.500139
Target:  5'- uCCgCCCUUCCCGCcauuaAGAcgcUGGGACa -3'
miRNA:   3'- cGGgGGGAGGGGCGug---UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 132767 0.68 0.491001
Target:  5'- -gCCUCCUgCCCGCGguGcgGGaGGCGg -3'
miRNA:   3'- cgGGGGGAgGGGCGUguCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 38699 0.68 0.490092
Target:  5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3'
miRNA:   3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5'
5559 3' -62.5 NC_001806.1 + 29152 0.68 0.489183
Target:  5'- aGCCCCCCccgcgaggaagaCCCCG-GCAGuugcgGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-----------GGGGCgUGUCua---CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 120297 0.69 0.472963
Target:  5'- uGCCCuggCCgUCCUgGCACAccuGggGGGACGg -3'
miRNA:   3'- -CGGG---GGgAGGGgCGUGU---CuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 30577 0.69 0.472963
Target:  5'- cGUCCCCC-CCUCGCGCcGGcaGGGGCc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUa-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 115919 0.69 0.46407
Target:  5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3'
miRNA:   3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 147326 0.69 0.46407
Target:  5'- cGCCCCCCcggCCCUGaguCGGA-GGGGgGg -3'
miRNA:   3'- -CGGGGGGa--GGGGCgu-GUCUaCCCUgC- -5'
5559 3' -62.5 NC_001806.1 + 146654 0.69 0.455265
Target:  5'- cGCCCCCugCUCCCCGgacCACGGGUGccgaGACc -3'
miRNA:   3'- -CGGGGG--GAGGGGC---GUGUCUACc---CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.