miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 5910 0.67 0.563079
Target:  5'- cGCCCgCCUUgCCGCccccccauuggccgGCGGgcGGGACc -3'
miRNA:   3'- -CGGGgGGAGgGGCG--------------UGUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 33341 0.67 0.575564
Target:  5'- cGCCCCUUggccgCCCCgGCuGCAGG-GGGGCc -3'
miRNA:   3'- -CGGGGGGa----GGGG-CG-UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 44114 0.67 0.575564
Target:  5'- -aCCCCCggUCCCGCGCucgcucGggGGGGCc -3'
miRNA:   3'- cgGGGGGa-GGGGCGUGu-----CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 45548 0.67 0.584245
Target:  5'- uUCCCCUUCCUCGC--GGAaaccgagaccguuUGGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGCGugUCU-------------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 67365 0.67 0.584245
Target:  5'- gGCCgCCC-CCCCGCGCAuGGUGccccgcaGGAUc -3'
miRNA:   3'- -CGGgGGGaGGGGCGUGU-CUAC-------CCUGc -5'
5559 3' -62.5 NC_001806.1 + 114486 0.67 0.585211
Target:  5'- -aCCCCCUCCCCGUcCAcgcgcuguucGccGGGGCc -3'
miRNA:   3'- cgGGGGGAGGGGCGuGU----------CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 143228 0.67 0.585211
Target:  5'- -aCCCCCaaCCCGUGCuGGUGGuGCGg -3'
miRNA:   3'- cgGGGGGagGGGCGUGuCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 123940 0.67 0.60459
Target:  5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3'
miRNA:   3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 51008 0.67 0.60459
Target:  5'- cCCCCCCgcCCCCGUaaGCGGcgGGucCGu -3'
miRNA:   3'- cGGGGGGa-GGGGCG--UGUCuaCCcuGC- -5'
5559 3' -62.5 NC_001806.1 + 144595 0.67 0.60459
Target:  5'- gGCUCUCCgggCCCCccuGCAGccGGGGCGg -3'
miRNA:   3'- -CGGGGGGa--GGGGcg-UGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 23529 0.67 0.60459
Target:  5'- gGCCCCgaCC-CCCUGgGCGGcUGGcGGCGg -3'
miRNA:   3'- -CGGGG--GGaGGGGCgUGUCuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 21429 0.66 0.621123
Target:  5'- cGCCgCCCCggacCCCCGCcuuucgagccgacgACGauGAcgGGGACGa -3'
miRNA:   3'- -CGG-GGGGa---GGGGCG--------------UGU--CUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 23782 0.66 0.624044
Target:  5'- -aCCCCCaCCCC-CACGGGgccgccgGGGGCc -3'
miRNA:   3'- cgGGGGGaGGGGcGUGUCUa------CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 26888 0.66 0.624044
Target:  5'- -aCCCCCgcgacCCCCGCGCGGGUGcG-Cu -3'
miRNA:   3'- cgGGGGGa----GGGGCGUGUCUACcCuGc -5'
5559 3' -62.5 NC_001806.1 + 22070 0.66 0.63086
Target:  5'- gGCCCCCgC-CCCCgGgGCGGGUGcuguacggcggccuGGGCGa -3'
miRNA:   3'- -CGGGGG-GaGGGG-CgUGUCUAC--------------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 140338 0.66 0.633782
Target:  5'- uGCCCCCCcCCCCuuGCGGgcGGucCa -3'
miRNA:   3'- -CGGGGGGaGGGGcgUGUCuaCCcuGc -5'
5559 3' -62.5 NC_001806.1 + 5060 0.66 0.633782
Target:  5'- gGCCCCCCg-CUCGuCGCGGucugggcucgGGGugGg -3'
miRNA:   3'- -CGGGGGGagGGGC-GUGUCua--------CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 47234 0.66 0.633782
Target:  5'- gGCCCCCC-CgCUGUACGcaacGGGGCGc -3'
miRNA:   3'- -CGGGGGGaGgGGCGUGUcua-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 100378 0.66 0.643519
Target:  5'- aGCUCCCgUCgCCGgGCGGcgcgGGGGCc -3'
miRNA:   3'- -CGGGGGgAGgGGCgUGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 59002 0.66 0.643519
Target:  5'- gGCgCCCCCUCCuCCG-GCugcccGA-GGGACGc -3'
miRNA:   3'- -CG-GGGGGAGG-GGCgUGu----CUaCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.