Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5559 | 3' | -62.5 | NC_001806.1 | + | 83888 | 0.7 | 0.396314 |
Target: 5'- cGCCCgUCUCCuggaCUGCACGGAgggucggcgcgGGGGCGg -3' miRNA: 3'- -CGGGgGGAGG----GGCGUGUCUa----------CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 90817 | 0.68 | 0.500139 |
Target: 5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3' miRNA: 3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 95868 | 0.68 | 0.550667 |
Target: 5'- aGCCCCCCaaCaCCGCGCuguauuacagcgucgAGAacgUGGGGCu -3' miRNA: 3'- -CGGGGGGagG-GGCGUG---------------UCU---ACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 100378 | 0.66 | 0.643519 |
Target: 5'- aGCUCCCgUCgCCGgGCGGcgcgGGGGCc -3' miRNA: 3'- -CGGGGGgAGgGGCgUGUCua--CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 103687 | 0.7 | 0.404432 |
Target: 5'- cCCCCCCgccCUCCGUGgAGGUGGGGg- -3' miRNA: 3'- cGGGGGGa--GGGGCGUgUCUACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 106351 | 0.7 | 0.404432 |
Target: 5'- cGCCCCCCcgaCCGC-CGGuUGGGGCc -3' miRNA: 3'- -CGGGGGGaggGGCGuGUCuACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 106895 | 0.69 | 0.455265 |
Target: 5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3' miRNA: 3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 109386 | 0.73 | 0.26243 |
Target: 5'- cGCCCCCCgaCCCCGCccccgacccggcgAUGGGucgUGGGGCGc -3' miRNA: 3'- -CGGGGGGa-GGGGCG-------------UGUCU---ACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 110641 | 0.68 | 0.546865 |
Target: 5'- uCCCCaCCUCCaCCGCACAccccauGAccaugcGGGAUGa -3' miRNA: 3'- cGGGG-GGAGG-GGCGUGU------CUa-----CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 114486 | 0.67 | 0.585211 |
Target: 5'- -aCCCCCUCCCCGUcCAcgcgcuguucGccGGGGCc -3' miRNA: 3'- cgGGGGGAGGGGCGuGU----------CuaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 115820 | 0.66 | 0.662962 |
Target: 5'- cGCCCCCUuugUCCCCGCcgACAagccgcgauuccGA-GGGcCGg -3' miRNA: 3'- -CGGGGGG---AGGGGCG--UGU------------CUaCCCuGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 115919 | 0.69 | 0.46407 |
Target: 5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3' miRNA: 3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 120297 | 0.69 | 0.472963 |
Target: 5'- uGCCCuggCCgUCCUgGCACAccuGggGGGACGg -3' miRNA: 3'- -CGGG---GGgAGGGgCGUGU---CuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 120825 | 0.75 | 0.213764 |
Target: 5'- uGCCCUCC-CCCCGCccccggcauggcGCAGcUGGGACc -3' miRNA: 3'- -CGGGGGGaGGGGCG------------UGUCuACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 121771 | 0.69 | 0.441367 |
Target: 5'- gGCCCCCCgccgUCCuuGCAUcacggaccgucugcaAGAggucgucggGGGACGg -3' miRNA: 3'- -CGGGGGG----AGGggCGUG---------------UCUa--------CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 123940 | 0.67 | 0.60459 |
Target: 5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3' miRNA: 3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 126796 | 0.69 | 0.43793 |
Target: 5'- uGCCCCCCcCaCCCGCAUc--UGGuGACGu -3' miRNA: 3'- -CGGGGGGaG-GGGCGUGucuACC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 132767 | 0.68 | 0.491001 |
Target: 5'- -gCCUCCUgCCCGCGguGcgGGaGGCGg -3' miRNA: 3'- cgGGGGGAgGGGCGUguCuaCC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 133984 | 1.09 | 0.000878 |
Target: 5'- uGCCCCCCUCCCCGCACAGAUGGGACGc -3' miRNA: 3'- -CGGGGGGAGGGGCGUGUCUACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 140338 | 0.66 | 0.633782 |
Target: 5'- uGCCCCCCcCCCCuuGCGGgcGGucCa -3' miRNA: 3'- -CGGGGGGaGGGGcgUGUCuaCCcuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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