miRNA display CGI


Results 61 - 80 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 30577 0.69 0.472963
Target:  5'- cGUCCCCC-CCUCGCGCcGGcaGGGGCc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUa-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30482 0.74 0.245651
Target:  5'- cGCUCCCCUCCgCCGCcucugucgaGCAGGaGGcGGCGg -3'
miRNA:   3'- -CGGGGGGAGG-GGCG---------UGUCUaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 30171 0.68 0.527047
Target:  5'- cGCCCCCCgCCCCGggccccccgcgucCGCGGccgcGUcGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGC-------------GUGUC----UA-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 29785 0.68 0.507504
Target:  5'- cGCCCCCCcacgcagaggcgCCgCCGCGCcccccgugacGGgcGGGGCGu -3'
miRNA:   3'- -CGGGGGGa-----------GG-GGCGUG----------UCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 29152 0.68 0.489183
Target:  5'- aGCCCCCCccgcgaggaagaCCCCG-GCAGuugcgGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-----------GGGGCgUGUCua---CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 28815 0.7 0.42098
Target:  5'- uCCCCCCUCuUCCGaggccaGCAGG-GGGGCa -3'
miRNA:   3'- cGGGGGGAG-GGGCg-----UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 27873 0.67 0.556386
Target:  5'- gGCCUgCCUCCCCugggacGCGCGGccauUGGGGg- -3'
miRNA:   3'- -CGGGgGGAGGGG------CGUGUCu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 26888 0.66 0.624044
Target:  5'- -aCCCCCgcgacCCCCGCGCGGGUGcG-Cu -3'
miRNA:   3'- cgGGGGGa----GGGGCGUGUCUACcCuGc -5'
5559 3' -62.5 NC_001806.1 + 26688 0.68 0.518635
Target:  5'- gGCCCCCaccgCCCgGCGUGGGcccggGGGGCGg -3'
miRNA:   3'- -CGGGGGga--GGGgCGUGUCUa----CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 26512 0.66 0.643519
Target:  5'- cGCCCCgCCgccgCCCCcCGCcGGUGGGcCc -3'
miRNA:   3'- -CGGGG-GGa---GGGGcGUGuCUACCCuGc -5'
5559 3' -62.5 NC_001806.1 + 23782 0.66 0.624044
Target:  5'- -aCCCCCaCCCC-CACGGGgccgccgGGGGCc -3'
miRNA:   3'- cgGGGGGaGGGGcGUGUCUa------CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 23529 0.67 0.60459
Target:  5'- gGCCCCgaCC-CCCUGgGCGGcUGGcGGCGg -3'
miRNA:   3'- -CGGGG--GGaGGGGCgUGUCuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 23393 0.74 0.249618
Target:  5'- cGCCCCCCUCCCCGCGCccgcgccccccuccAcgcccccGGGGCc -3'
miRNA:   3'- -CGGGGGGAGGGGCGUG--------------Ucua----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 23258 0.72 0.29418
Target:  5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3'
miRNA:   3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 22901 0.68 0.518635
Target:  5'- gGCCCgCCagccCCCCGCGgcCGGA-GGGACc -3'
miRNA:   3'- -CGGGgGGa---GGGGCGU--GUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 22709 0.78 0.128843
Target:  5'- cGCCCgCCUCCCC-CGCGGggGGcGACGa -3'
miRNA:   3'- -CGGGgGGAGGGGcGUGUCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 22070 0.66 0.63086
Target:  5'- gGCCCCCgC-CCCCgGgGCGGGUGcuguacggcggccuGGGCGa -3'
miRNA:   3'- -CGGGGG-GaGGGG-CgUGUCUAC--------------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 21429 0.66 0.621123
Target:  5'- cGCCgCCCCggacCCCCGCcuuucgagccgacgACGauGAcgGGGACGa -3'
miRNA:   3'- -CGG-GGGGa---GGGGCG--------------UGU--CUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 20756 0.71 0.349866
Target:  5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3'
miRNA:   3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.