miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 126796 0.69 0.43793
Target:  5'- uGCCCCCCcCaCCCGCAUc--UGGuGACGu -3'
miRNA:   3'- -CGGGGGGaG-GGGCGUGucuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 151129 0.7 0.429406
Target:  5'- gGCgCCCCCUCCCCGCccgcgcgucGCAGGcgcaGGcGCGc -3'
miRNA:   3'- -CG-GGGGGAGGGGCG---------UGUCUa---CCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 28815 0.7 0.42098
Target:  5'- uCCCCCCUCuUCCGaggccaGCAGG-GGGGCa -3'
miRNA:   3'- cGGGGGGAG-GGGCg-----UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20160 0.7 0.407709
Target:  5'- cGCCCCCCgccgcccgggcccgCCCCcggggccgGCGCGGAgucGGGcACGg -3'
miRNA:   3'- -CGGGGGGa-------------GGGG--------CGUGUCUa--CCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 106351 0.7 0.404432
Target:  5'- cGCCCCCCcgaCCGC-CGGuUGGGGCc -3'
miRNA:   3'- -CGGGGGGaggGGCGuGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 103687 0.7 0.404432
Target:  5'- cCCCCCCgccCUCCGUGgAGGUGGGGg- -3'
miRNA:   3'- cGGGGGGa--GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 14113 0.7 0.404432
Target:  5'- uGCCCCCCcauccCCCUGC-CGGAcaugguuuggGGGGCGc -3'
miRNA:   3'- -CGGGGGGa----GGGGCGuGUCUa---------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83888 0.7 0.396314
Target:  5'- cGCCCgUCUCCuggaCUGCACGGAgggucggcgcgGGGGCGg -3'
miRNA:   3'- -CGGGgGGAGG----GGCGUGUCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 2974 0.7 0.388301
Target:  5'- uGCgCCCCUCCCgCgGCGCGGGgaGGcGGCGg -3'
miRNA:   3'- -CGgGGGGAGGG-G-CGUGUCUa-CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 28643 0.71 0.380395
Target:  5'- gGCCCCCCUUacucaCaCGCAUcuAGggGGGugGg -3'
miRNA:   3'- -CGGGGGGAGg----G-GCGUG--UCuaCCCugC- -5'
5559 3' -62.5 NC_001806.1 + 5850 0.71 0.357332
Target:  5'- gGCCCCCCggUCCCGCccgcCGGAcgccGGGACc -3'
miRNA:   3'- -CGGGGGGa-GGGGCGu---GUCUa---CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20756 0.71 0.349866
Target:  5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3'
miRNA:   3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 83312 0.72 0.335268
Target:  5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3'
miRNA:   3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 17665 0.72 0.335268
Target:  5'- aGCCCCCCUCgCCUcuacCACuuGUGGGugGu -3'
miRNA:   3'- -CGGGGGGAG-GGGc---GUGucUACCCugC- -5'
5559 3' -62.5 NC_001806.1 + 151256 0.72 0.307425
Target:  5'- cGCCCCCCgggCCCaCGC-CGGGcggugGGGGCc -3'
miRNA:   3'- -CGGGGGGa--GGG-GCGuGUCUa----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20586 0.72 0.307425
Target:  5'- cGCCCUCgCgCCCCGCccaugGCAGAUGGcGCGg -3'
miRNA:   3'- -CGGGGG-GaGGGGCG-----UGUCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 23258 0.72 0.29418
Target:  5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3'
miRNA:   3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 2455 0.73 0.287726
Target:  5'- gGCCCCCggcggCCCCGUGgGGGUGGGGg- -3'
miRNA:   3'- -CGGGGGga---GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 149785 0.73 0.275154
Target:  5'- gGCCCCUCaCCUCGCGCug--GGGGCGg -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGucuaCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.