Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5559 | 3' | -62.5 | NC_001806.1 | + | 30620 | 0.68 | 0.518635 |
Target: 5'- aCCCCCC-CUCCGacuCAGGgccgggGGGGCGc -3' miRNA: 3'- cGGGGGGaGGGGCgu-GUCUa-----CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 22901 | 0.68 | 0.518635 |
Target: 5'- gGCCCgCCagccCCCCGCGgcCGGA-GGGACc -3' miRNA: 3'- -CGGGgGGa---GGGGCGU--GUCUaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 26688 | 0.68 | 0.518635 |
Target: 5'- gGCCCCCaccgCCCgGCGUGGGcccggGGGGCGg -3' miRNA: 3'- -CGGGGGga--GGGgCGUGUCUa----CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 70278 | 0.68 | 0.509352 |
Target: 5'- aGCCCCCCccgCCCCcCG-AGGUGGGcACc -3' miRNA: 3'- -CGGGGGGa--GGGGcGUgUCUACCC-UGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 147364 | 0.68 | 0.508428 |
Target: 5'- cGCCcucuuggCCCCUgCCgGCGCgaGGggGGGACGc -3' miRNA: 3'- -CGG-------GGGGAgGGgCGUG--UCuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 29785 | 0.68 | 0.507504 |
Target: 5'- cGCCCCCCcacgcagaggcgCCgCCGCGCcccccgugacGGgcGGGGCGu -3' miRNA: 3'- -CGGGGGGa-----------GG-GGCGUG----------UCuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 90817 | 0.68 | 0.500139 |
Target: 5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3' miRNA: 3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 18247 | 0.68 | 0.500139 |
Target: 5'- uCCgCCCUUCCCGCcauuaAGAcgcUGGGACa -3' miRNA: 3'- cGGgGGGAGGGGCGug---UCU---ACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 132767 | 0.68 | 0.491001 |
Target: 5'- -gCCUCCUgCCCGCGguGcgGGaGGCGg -3' miRNA: 3'- cgGGGGGAgGGGCGUguCuaCC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 38699 | 0.68 | 0.490092 |
Target: 5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3' miRNA: 3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 29152 | 0.68 | 0.489183 |
Target: 5'- aGCCCCCCccgcgaggaagaCCCCG-GCAGuugcgGGGGCGc -3' miRNA: 3'- -CGGGGGGa-----------GGGGCgUGUCua---CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 30577 | 0.69 | 0.472963 |
Target: 5'- cGUCCCCC-CCUCGCGCcGGcaGGGGCc -3' miRNA: 3'- -CGGGGGGaGGGGCGUGuCUa-CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 120297 | 0.69 | 0.472963 |
Target: 5'- uGCCCuggCCgUCCUgGCACAccuGggGGGACGg -3' miRNA: 3'- -CGGG---GGgAGGGgCGUGU---CuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 147326 | 0.69 | 0.46407 |
Target: 5'- cGCCCCCCcggCCCUGaguCGGA-GGGGgGg -3' miRNA: 3'- -CGGGGGGa--GGGGCgu-GUCUaCCCUgC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 115919 | 0.69 | 0.46407 |
Target: 5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3' miRNA: 3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 146654 | 0.69 | 0.455265 |
Target: 5'- cGCCCCCugCUCCCCGgacCACGGGUGccgaGACc -3' miRNA: 3'- -CGGGGG--GAGGGGC---GUGUCUACc---CUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 72810 | 0.69 | 0.455265 |
Target: 5'- cGCCCCCaagacCCCCGcCGCAGA-GGcGGCc -3' miRNA: 3'- -CGGGGGga---GGGGC-GUGUCUaCC-CUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 106895 | 0.69 | 0.455265 |
Target: 5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3' miRNA: 3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 121771 | 0.69 | 0.441367 |
Target: 5'- gGCCCCCCgccgUCCuuGCAUcacggaccgucugcaAGAggucgucggGGGACGg -3' miRNA: 3'- -CGGGGGG----AGGggCGUG---------------UCUa--------CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 83242 | 0.69 | 0.43793 |
Target: 5'- -gCCCCCUCaagggCCCGCGgGGggGcGGGCGa -3' miRNA: 3'- cgGGGGGAG-----GGGCGUgUCuaC-CCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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