miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 115919 0.69 0.46407
Target:  5'- gGCCCgacagaCCUCCCCGCGCAugcucUGGGGu- -3'
miRNA:   3'- -CGGGg-----GGAGGGGCGUGUcu---ACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 115820 0.66 0.662962
Target:  5'- cGCCCCCUuugUCCCCGCcgACAagccgcgauuccGA-GGGcCGg -3'
miRNA:   3'- -CGGGGGG---AGGGGCG--UGU------------CUaCCCuGC- -5'
5559 3' -62.5 NC_001806.1 + 114486 0.67 0.585211
Target:  5'- -aCCCCCUCCCCGUcCAcgcgcuguucGccGGGGCc -3'
miRNA:   3'- cgGGGGGAGGGGCGuGU----------CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 110641 0.68 0.546865
Target:  5'- uCCCCaCCUCCaCCGCACAccccauGAccaugcGGGAUGa -3'
miRNA:   3'- cGGGG-GGAGG-GGCGUGU------CUa-----CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 109386 0.73 0.26243
Target:  5'- cGCCCCCCgaCCCCGCccccgacccggcgAUGGGucgUGGGGCGc -3'
miRNA:   3'- -CGGGGGGa-GGGGCG-------------UGUCU---ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 106895 0.69 0.455265
Target:  5'- cGCCCCCCUCUCUucugGCGCcuaacGGGGCu -3'
miRNA:   3'- -CGGGGGGAGGGG----CGUGucua-CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 106351 0.7 0.404432
Target:  5'- cGCCCCCCcgaCCGC-CGGuUGGGGCc -3'
miRNA:   3'- -CGGGGGGaggGGCGuGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 103687 0.7 0.404432
Target:  5'- cCCCCCCgccCUCCGUGgAGGUGGGGg- -3'
miRNA:   3'- cGGGGGGa--GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 100378 0.66 0.643519
Target:  5'- aGCUCCCgUCgCCGgGCGGcgcgGGGGCc -3'
miRNA:   3'- -CGGGGGgAGgGGCgUGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 95868 0.68 0.550667
Target:  5'- aGCCCCCCaaCaCCGCGCuguauuacagcgucgAGAacgUGGGGCu -3'
miRNA:   3'- -CGGGGGGagG-GGCGUG---------------UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 90817 0.68 0.500139
Target:  5'- cCCCCCCUCaaCCGCcuccuguucgagGCGGucGUGGGACc -3'
miRNA:   3'- cGGGGGGAGg-GGCG------------UGUC--UACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 83888 0.7 0.396314
Target:  5'- cGCCCgUCUCCuggaCUGCACGGAgggucggcgcgGGGGCGg -3'
miRNA:   3'- -CGGGgGGAGG----GGCGUGUCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 83312 0.72 0.335268
Target:  5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3'
miRNA:   3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 83242 0.69 0.43793
Target:  5'- -gCCCCCUCaagggCCCGCGgGGggGcGGGCGa -3'
miRNA:   3'- cgGGGGGAG-----GGGCGUgUCuaC-CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 82434 0.84 0.054531
Target:  5'- cGCCuCCCCguccccgCCCCGCAacgUAGAUGGGACGa -3'
miRNA:   3'- -CGG-GGGGa------GGGGCGU---GUCUACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 79923 0.66 0.662962
Target:  5'- cGCCCCCggucgcaaCCgGCACGGuuuugcccgGGGGCGa -3'
miRNA:   3'- -CGGGGGgag-----GGgCGUGUCua-------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 73963 0.66 0.653248
Target:  5'- cGCCgggCCCCUCggcguaaugCCCGCccCGGccGGGGCGg -3'
miRNA:   3'- -CGG---GGGGAG---------GGGCGu-GUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 72810 0.69 0.455265
Target:  5'- cGCCCCCaagacCCCCGcCGCAGA-GGcGGCc -3'
miRNA:   3'- -CGGGGGga---GGGGC-GUGUCUaCC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 70278 0.68 0.509352
Target:  5'- aGCCCCCCccgCCCCcCG-AGGUGGGcACc -3'
miRNA:   3'- -CGGGGGGa--GGGGcGUgUCUACCC-UGc -5'
5559 3' -62.5 NC_001806.1 + 67365 0.67 0.584245
Target:  5'- gGCCgCCC-CCCCGCGCAuGGUGccccgcaGGAUc -3'
miRNA:   3'- -CGGgGGGaGGGGCGUGU-CUAC-------CCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.