miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 151256 0.72 0.307425
Target:  5'- cGCCCCCCgggCCCaCGC-CGGGcggugGGGGCc -3'
miRNA:   3'- -CGGGGGGa--GGG-GCGuGUCUa----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 151129 0.7 0.429406
Target:  5'- gGCgCCCCCUCCCCGCccgcgcgucGCAGGcgcaGGcGCGc -3'
miRNA:   3'- -CG-GGGGGAGGGGCG---------UGUCUa---CCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 149785 0.73 0.275154
Target:  5'- gGCCCCUCaCCUCGCGCug--GGGGCGg -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGucuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 147364 0.68 0.508428
Target:  5'- cGCCcucuuggCCCCUgCCgGCGCgaGGggGGGACGc -3'
miRNA:   3'- -CGG-------GGGGAgGGgCGUG--UCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 147326 0.69 0.46407
Target:  5'- cGCCCCCCcggCCCUGaguCGGA-GGGGgGg -3'
miRNA:   3'- -CGGGGGGa--GGGGCgu-GUCUaCCCUgC- -5'
5559 3' -62.5 NC_001806.1 + 146654 0.69 0.455265
Target:  5'- cGCCCCCugCUCCCCGgacCACGGGUGccgaGACc -3'
miRNA:   3'- -CGGGGG--GAGGGGC---GUGUCUACc---CUGc -5'
5559 3' -62.5 NC_001806.1 + 146595 0.75 0.213764
Target:  5'- cCCCCCCUCCCCacaaaCACGG--GGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGc----GUGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 146530 0.74 0.234063
Target:  5'- uUUCCCCUCCCCGaCACGGAuuggcugguguagUGGGcGCGg -3'
miRNA:   3'- cGGGGGGAGGGGC-GUGUCU-------------ACCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 144595 0.67 0.60459
Target:  5'- gGCUCUCCgggCCCCccuGCAGccGGGGCGg -3'
miRNA:   3'- -CGGGGGGa--GGGGcg-UGUCuaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 144341 0.74 0.223978
Target:  5'- gGCCCCCCgCCCCGCGCcGGUccauuaaGGGCGc -3'
miRNA:   3'- -CGGGGGGaGGGGCGUGuCUAc------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 144314 0.68 0.527985
Target:  5'- aCCCCCC-CCCCGCcCGuGUGGGu-- -3'
miRNA:   3'- cGGGGGGaGGGGCGuGUcUACCCugc -5'
5559 3' -62.5 NC_001806.1 + 143228 0.67 0.585211
Target:  5'- -aCCCCCaaCCCGUGCuGGUGGuGCGg -3'
miRNA:   3'- cgGGGGGagGGGCGUGuCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 140338 0.66 0.633782
Target:  5'- uGCCCCCCcCCCCuuGCGGgcGGucCa -3'
miRNA:   3'- -CGGGGGGaGGGGcgUGUCuaCCcuGc -5'
5559 3' -62.5 NC_001806.1 + 133984 1.09 0.000878
Target:  5'- uGCCCCCCUCCCCGCACAGAUGGGACGc -3'
miRNA:   3'- -CGGGGGGAGGGGCGUGUCUACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 132767 0.68 0.491001
Target:  5'- -gCCUCCUgCCCGCGguGcgGGaGGCGg -3'
miRNA:   3'- cgGGGGGAgGGGCGUguCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 126796 0.69 0.43793
Target:  5'- uGCCCCCCcCaCCCGCAUc--UGGuGACGu -3'
miRNA:   3'- -CGGGGGGaG-GGGCGUGucuACC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 123940 0.67 0.60459
Target:  5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3'
miRNA:   3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 121771 0.69 0.441367
Target:  5'- gGCCCCCCgccgUCCuuGCAUcacggaccgucugcaAGAggucgucggGGGACGg -3'
miRNA:   3'- -CGGGGGG----AGGggCGUG---------------UCUa--------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 120825 0.75 0.213764
Target:  5'- uGCCCUCC-CCCCGCccccggcauggcGCAGcUGGGACc -3'
miRNA:   3'- -CGGGGGGaGGGGCG------------UGUCuACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 120297 0.69 0.472963
Target:  5'- uGCCCuggCCgUCCUgGCACAccuGggGGGACGg -3'
miRNA:   3'- -CGGG---GGgAGGGgCGUGU---CuaCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.