miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 720 0.66 0.647412
Target:  5'- gGCCCcagCCCUCCCCGgCGCgucccgcgcucccucGGggGGGuuCGg -3'
miRNA:   3'- -CGGG---GGGAGGGGC-GUG---------------UCuaCCCu-GC- -5'
5559 3' -62.5 NC_001806.1 + 2455 0.73 0.287726
Target:  5'- gGCCCCCggcggCCCCGUGgGGGUGGGGg- -3'
miRNA:   3'- -CGGGGGga---GGGGCGUgUCUACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 2974 0.7 0.388301
Target:  5'- uGCgCCCCUCCCgCgGCGCGGGgaGGcGGCGg -3'
miRNA:   3'- -CGgGGGGAGGG-G-CGUGUCUa-CC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 5060 0.66 0.633782
Target:  5'- gGCCCCCCg-CUCGuCGCGGucugggcucgGGGugGg -3'
miRNA:   3'- -CGGGGGGagGGGC-GUGUCua--------CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 5850 0.71 0.357332
Target:  5'- gGCCCCCCggUCCCGCccgcCGGAcgccGGGACc -3'
miRNA:   3'- -CGGGGGGa-GGGGCGu---GUCUa---CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 5910 0.67 0.563079
Target:  5'- cGCCCgCCUUgCCGCccccccauuggccgGCGGgcGGGACc -3'
miRNA:   3'- -CGGGgGGAGgGGCG--------------UGUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 14113 0.7 0.404432
Target:  5'- uGCCCCCCcauccCCCUGC-CGGAcaugguuuggGGGGCGc -3'
miRNA:   3'- -CGGGGGGa----GGGGCGuGUCUa---------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 17665 0.72 0.335268
Target:  5'- aGCCCCCCUCgCCUcuacCACuuGUGGGugGu -3'
miRNA:   3'- -CGGGGGGAG-GGGc---GUGucUACCCugC- -5'
5559 3' -62.5 NC_001806.1 + 18247 0.68 0.500139
Target:  5'- uCCgCCCUUCCCGCcauuaAGAcgcUGGGACa -3'
miRNA:   3'- cGGgGGGAGGGGCGug---UCU---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 20160 0.7 0.407709
Target:  5'- cGCCCCCCgccgcccgggcccgCCCCcggggccgGCGCGGAgucGGGcACGg -3'
miRNA:   3'- -CGGGGGGa-------------GGGG--------CGUGUCUa--CCC-UGC- -5'
5559 3' -62.5 NC_001806.1 + 20302 0.66 0.661992
Target:  5'- cGCCCCCUUggggcggUCCCGCccgccggccaAUGGG-GGGGCGg -3'
miRNA:   3'- -CGGGGGGA-------GGGGCG----------UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 20586 0.72 0.307425
Target:  5'- cGCCCUCgCgCCCCGCccaugGCAGAUGGcGCGg -3'
miRNA:   3'- -CGGGGG-GaGGGGCG-----UGUCUACCcUGC- -5'
5559 3' -62.5 NC_001806.1 + 20756 0.71 0.349866
Target:  5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3'
miRNA:   3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5'
5559 3' -62.5 NC_001806.1 + 21429 0.66 0.621123
Target:  5'- cGCCgCCCCggacCCCCGCcuuucgagccgacgACGauGAcgGGGACGa -3'
miRNA:   3'- -CGG-GGGGa---GGGGCG--------------UGU--CUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 22070 0.66 0.63086
Target:  5'- gGCCCCCgC-CCCCgGgGCGGGUGcuguacggcggccuGGGCGa -3'
miRNA:   3'- -CGGGGG-GaGGGG-CgUGUCUAC--------------CCUGC- -5'
5559 3' -62.5 NC_001806.1 + 22709 0.78 0.128843
Target:  5'- cGCCCgCCUCCCC-CGCGGggGGcGACGa -3'
miRNA:   3'- -CGGGgGGAGGGGcGUGUCuaCC-CUGC- -5'
5559 3' -62.5 NC_001806.1 + 22901 0.68 0.518635
Target:  5'- gGCCCgCCagccCCCCGCGgcCGGA-GGGACc -3'
miRNA:   3'- -CGGGgGGa---GGGGCGU--GUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 23258 0.72 0.29418
Target:  5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3'
miRNA:   3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 23393 0.74 0.249618
Target:  5'- cGCCCCCCUCCCCGCGCccgcgccccccuccAcgcccccGGGGCc -3'
miRNA:   3'- -CGGGGGGAGGGGCGUG--------------Ucua----CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 23529 0.67 0.60459
Target:  5'- gGCCCCgaCC-CCCUGgGCGGcUGGcGGCGg -3'
miRNA:   3'- -CGGGG--GGaGGGGCgUGUCuACC-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.