Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5559 | 3' | -62.5 | NC_001806.1 | + | 109386 | 0.73 | 0.26243 |
Target: 5'- cGCCCCCCgaCCCCGCccccgacccggcgAUGGGucgUGGGGCGc -3' miRNA: 3'- -CGGGGGGa-GGGGCG-------------UGUCU---ACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 60979 | 0.66 | 0.666842 |
Target: 5'- gGCCCCCC-CaCCCGCGuucuacaaggacgucCuGGccaaauucUGGGACGa -3' miRNA: 3'- -CGGGGGGaG-GGGCGU---------------GuCU--------ACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 20756 | 0.71 | 0.349866 |
Target: 5'- uGCuCCUCCUUCCCGC-CGGccccUGGGACu -3' miRNA: 3'- -CG-GGGGGAGGGGCGuGUCu---ACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 83312 | 0.72 | 0.335268 |
Target: 5'- cGCCCCCggaUCCCUGUGgGGA-GGGGCu -3' miRNA: 3'- -CGGGGGg--AGGGGCGUgUCUaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 17665 | 0.72 | 0.335268 |
Target: 5'- aGCCCCCCUCgCCUcuacCACuuGUGGGugGu -3' miRNA: 3'- -CGGGGGGAG-GGGc---GUGucUACCCugC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 151256 | 0.72 | 0.307425 |
Target: 5'- cGCCCCCCgggCCCaCGC-CGGGcggugGGGGCc -3' miRNA: 3'- -CGGGGGGa--GGG-GCGuGUCUa----CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 20586 | 0.72 | 0.307425 |
Target: 5'- cGCCCUCgCgCCCCGCccaugGCAGAUGGcGCGg -3' miRNA: 3'- -CGGGGG-GaGGGGCG-----UGUCUACCcUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 23258 | 0.72 | 0.29418 |
Target: 5'- cGCCgCCgCCUCCgCCGCgccGCGGGaGGGGCGc -3' miRNA: 3'- -CGG-GG-GGAGG-GGCG---UGUCUaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 2455 | 0.73 | 0.287726 |
Target: 5'- gGCCCCCggcggCCCCGUGgGGGUGGGGg- -3' miRNA: 3'- -CGGGGGga---GGGGCGUgUCUACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 149785 | 0.73 | 0.275154 |
Target: 5'- gGCCCCUCaCCUCGCGCug--GGGGCGg -3' miRNA: 3'- -CGGGGGGaGGGGCGUGucuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 57891 | 0.73 | 0.263025 |
Target: 5'- cGCCCCCCgagcgcCCCCGCuuGGucGUGGGAg- -3' miRNA: 3'- -CGGGGGGa-----GGGGCGugUC--UACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 133984 | 1.09 | 0.000878 |
Target: 5'- uGCCCCCCUCCCCGCACAGAUGGGACGc -3' miRNA: 3'- -CGGGGGGAGGGGCGUGUCUACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 23393 | 0.74 | 0.249618 |
Target: 5'- cGCCCCCCUCCCCGCGCccgcgccccccuccAcgcccccGGGGCc -3' miRNA: 3'- -CGGGGGGAGGGGCGUG--------------Ucua----CCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 30482 | 0.74 | 0.245651 |
Target: 5'- cGCUCCCCUCCgCCGCcucugucgaGCAGGaGGcGGCGg -3' miRNA: 3'- -CGGGGGGAGG-GGCG---------UGUCUaCC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 146530 | 0.74 | 0.234063 |
Target: 5'- uUUCCCCUCCCCGaCACGGAuuggcugguguagUGGGcGCGg -3' miRNA: 3'- cGGGGGGAGGGGC-GUGUCU-------------ACCC-UGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 144341 | 0.74 | 0.223978 |
Target: 5'- gGCCCCCCgCCCCGCGCcGGUccauuaaGGGCGc -3' miRNA: 3'- -CGGGGGGaGGGGCGUGuCUAc------CCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 146595 | 0.75 | 0.213764 |
Target: 5'- cCCCCCCUCCCCacaaaCACGG--GGGGCGu -3' miRNA: 3'- cGGGGGGAGGGGc----GUGUCuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 120825 | 0.75 | 0.213764 |
Target: 5'- uGCCCUCC-CCCCGCccccggcauggcGCAGcUGGGACc -3' miRNA: 3'- -CGGGGGGaGGGGCG------------UGUCuACCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 46175 | 0.76 | 0.164512 |
Target: 5'- cGCCCCCCgggccCCCCGaacccaGCGGGUGGcGACu -3' miRNA: 3'- -CGGGGGGa----GGGGCg-----UGUCUACC-CUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 22709 | 0.78 | 0.128843 |
Target: 5'- cGCCCgCCUCCCC-CGCGGggGGcGACGa -3' miRNA: 3'- -CGGGgGGAGGGGcGUGUCuaCC-CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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