Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5559 | 3' | -62.5 | NC_001806.1 | + | 123940 | 0.67 | 0.60459 |
Target: 5'- aCCgCCCgcCCCUGCGCAGAUcccaGGcGGCGu -3' miRNA: 3'- cGGgGGGa-GGGGCGUGUCUA----CC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 51008 | 0.67 | 0.60459 |
Target: 5'- cCCCCCCgcCCCCGUaaGCGGcgGGucCGu -3' miRNA: 3'- cGGGGGGa-GGGGCG--UGUCuaCCcuGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 23529 | 0.67 | 0.60459 |
Target: 5'- gGCCCCgaCC-CCCUGgGCGGcUGGcGGCGg -3' miRNA: 3'- -CGGGG--GGaGGGGCgUGUCuACC-CUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 144595 | 0.67 | 0.60459 |
Target: 5'- gGCUCUCCgggCCCCccuGCAGccGGGGCGg -3' miRNA: 3'- -CGGGGGGa--GGGGcg-UGUCuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 143228 | 0.67 | 0.585211 |
Target: 5'- -aCCCCCaaCCCGUGCuGGUGGuGCGg -3' miRNA: 3'- cgGGGGGagGGGCGUGuCUACCcUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 67365 | 0.67 | 0.584245 |
Target: 5'- gGCCgCCC-CCCCGCGCAuGGUGccccgcaGGAUc -3' miRNA: 3'- -CGGgGGGaGGGGCGUGU-CUAC-------CCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 45548 | 0.67 | 0.584245 |
Target: 5'- uUCCCCUUCCUCGC--GGAaaccgagaccguuUGGGGCGu -3' miRNA: 3'- cGGGGGGAGGGGCGugUCU-------------ACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 44114 | 0.67 | 0.575564 |
Target: 5'- -aCCCCCggUCCCGCGCucgcucGggGGGGCc -3' miRNA: 3'- cgGGGGGa-GGGGCGUGu-----CuaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 33341 | 0.67 | 0.575564 |
Target: 5'- cGCCCCUUggccgCCCCgGCuGCAGG-GGGGCc -3' miRNA: 3'- -CGGGGGGa----GGGG-CG-UGUCUaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 5910 | 0.67 | 0.563079 |
Target: 5'- cGCCCgCCUUgCCGCccccccauuggccgGCGGgcGGGACc -3' miRNA: 3'- -CGGGgGGAGgGGCG--------------UGUCuaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 27873 | 0.67 | 0.556386 |
Target: 5'- gGCCUgCCUCCCCugggacGCGCGGccauUGGGGg- -3' miRNA: 3'- -CGGGgGGAGGGG------CGUGUCu---ACCCUgc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 60979 | 0.66 | 0.666842 |
Target: 5'- gGCCCCCC-CaCCCGCGuucuacaaggacgucCuGGccaaauucUGGGACGa -3' miRNA: 3'- -CGGGGGGaG-GGGCGU---------------GuCU--------ACCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 30770 | 0.66 | 0.662962 |
Target: 5'- cGUCCUCCUCCgcuuCCGCcuccuCGGgcGGGGCc -3' miRNA: 3'- -CGGGGGGAGG----GGCGu----GUCuaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 115820 | 0.66 | 0.662962 |
Target: 5'- cGCCCCCUuugUCCCCGCcgACAagccgcgauuccGA-GGGcCGg -3' miRNA: 3'- -CGGGGGG---AGGGGCG--UGU------------CUaCCCuGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 79923 | 0.66 | 0.662962 |
Target: 5'- cGCCCCCggucgcaaCCgGCACGGuuuugcccgGGGGCGa -3' miRNA: 3'- -CGGGGGgag-----GGgCGUGUCua-------CCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 46364 | 0.66 | 0.662962 |
Target: 5'- cGCCCCCCcaaaCCCCGaCGCgccauGGAccccccGGGugGc -3' miRNA: 3'- -CGGGGGGa---GGGGC-GUG-----UCUa-----CCCugC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 20302 | 0.66 | 0.661992 |
Target: 5'- cGCCCCCUUggggcggUCCCGCccgccggccaAUGGG-GGGGCGg -3' miRNA: 3'- -CGGGGGGA-------GGGGCG----------UGUCUaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 73963 | 0.66 | 0.653248 |
Target: 5'- cGCCgggCCCCUCggcguaaugCCCGCccCGGccGGGGCGg -3' miRNA: 3'- -CGG---GGGGAG---------GGGCGu-GUCuaCCCUGC- -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 41354 | 0.66 | 0.653248 |
Target: 5'- uGCCCCCCggcaUCCaggCCGC-CAG--GGGGCa -3' miRNA: 3'- -CGGGGGG----AGG---GGCGuGUCuaCCCUGc -5' |
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5559 | 3' | -62.5 | NC_001806.1 | + | 55270 | 0.66 | 0.652276 |
Target: 5'- gGCCCCCUccgCCCagaGCACguggggguccguuAGGUugGGGGCGc -3' miRNA: 3'- -CGGGGGGa--GGGg--CGUG-------------UCUA--CCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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