miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 122872 0.66 0.892346
Target:  5'- aGCCGCCgCGCCacgGCCGAGaagaGCGGcgAGUGc -3'
miRNA:   3'- -CGGUGG-GUGGg--UGGUUC----UGCC--UCAUu -5'
5559 5' -56.5 NC_001806.1 + 67744 0.66 0.892346
Target:  5'- aCCACCCACCCcacaGCCAAacGCGGcuaccgccuccGGUGGg -3'
miRNA:   3'- cGGUGGGUGGG----UGGUUc-UGCC-----------UCAUU- -5'
5559 5' -56.5 NC_001806.1 + 18247 0.66 0.892346
Target:  5'- uCCGCCCuuCCCGCCAuuaAGACGcuGGGa-- -3'
miRNA:   3'- cGGUGGGu-GGGUGGU---UCUGC--CUCauu -5'
5559 5' -56.5 NC_001806.1 + 79967 0.66 0.892346
Target:  5'- cGCCGCCC-CCCGCUAAccuCGGGu--- -3'
miRNA:   3'- -CGGUGGGuGGGUGGUUcu-GCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 88990 0.66 0.892346
Target:  5'- cGCCGCggccagaagCCGCCCGacCCGAcGCGGAGg-- -3'
miRNA:   3'- -CGGUG---------GGUGGGU--GGUUcUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 119298 0.66 0.892346
Target:  5'- cGCCcgcagACCCGCCCAUCGu--CGGGGc-- -3'
miRNA:   3'- -CGG-----UGGGUGGGUGGUucuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 89750 0.66 0.890325
Target:  5'- aGCgGCCaCGCCCACCGgcugaugacgcgcgGGGCGuGGGa-- -3'
miRNA:   3'- -CGgUGG-GUGGGUGGU--------------UCUGC-CUCauu -5'
5559 5' -56.5 NC_001806.1 + 101474 0.66 0.885531
Target:  5'- cGCCAaCCGCCgGgCCGGGACuGGAGc-- -3'
miRNA:   3'- -CGGUgGGUGGgU-GGUUCUG-CCUCauu -5'
5559 5' -56.5 NC_001806.1 + 57891 0.66 0.885531
Target:  5'- cGCCcCCCGagcgccCCCGCUuggucGugGGAGUGAc -3'
miRNA:   3'- -CGGuGGGU------GGGUGGuu---CugCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 83772 0.66 0.879205
Target:  5'- uGCCACCCggGCCCucaucggaaccuugGCCuccgggggcgaggagGGGGCGGGGUc- -3'
miRNA:   3'- -CGGUGGG--UGGG--------------UGG---------------UUCUGCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 49136 0.66 0.878491
Target:  5'- uCCACCCGCCCccgcgccucGCCcguGGCGGAc--- -3'
miRNA:   3'- cGGUGGGUGGG---------UGGuu-CUGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 100653 0.66 0.878491
Target:  5'- cGCCGCUCGgCCACCAGGcuccaGCGGu---- -3'
miRNA:   3'- -CGGUGGGUgGGUGGUUC-----UGCCucauu -5'
5559 5' -56.5 NC_001806.1 + 96765 0.66 0.878491
Target:  5'- cGCUGCCCgACCCGgcCCGAGggucagaacuacACGGAGg-- -3'
miRNA:   3'- -CGGUGGG-UGGGU--GGUUC------------UGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 21429 0.66 0.877775
Target:  5'- cGCCGCCCcggACCCccgccuuucgaGCCGAcgacgauGACGGGGa-- -3'
miRNA:   3'- -CGGUGGG---UGGG-----------UGGUU-------CUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 31873 0.66 0.876336
Target:  5'- cGCCuGCCCGCCCggacugaccugGCCucuggccgccacaaAGGGCGGGGg-- -3'
miRNA:   3'- -CGG-UGGGUGGG-----------UGG--------------UUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 23307 0.66 0.871229
Target:  5'- gGCCcgGCCCGgCCGCCcgGAGGCGGcGg-- -3'
miRNA:   3'- -CGG--UGGGUgGGUGG--UUCUGCCuCauu -5'
5559 5' -56.5 NC_001806.1 + 68082 0.66 0.863752
Target:  5'- uGUCcCCCACCCACgCGAGcCGGGcGUc- -3'
miRNA:   3'- -CGGuGGGUGGGUG-GUUCuGCCU-CAuu -5'
5559 5' -56.5 NC_001806.1 + 128055 0.66 0.863752
Target:  5'- gGCgGCCacgGCCC-CCAGGugGGGGc-- -3'
miRNA:   3'- -CGgUGGg--UGGGuGGUUCugCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 2712 0.66 0.863752
Target:  5'- cGCCAgCCGCCCAggGGGuCGGGGc-- -3'
miRNA:   3'- -CGGUgGGUGGGUggUUCuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 49272 0.66 0.863752
Target:  5'- aGCCGCCCGUgCGCCGucGACGGGa--- -3'
miRNA:   3'- -CGGUGGGUGgGUGGUu-CUGCCUcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.