miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 5' -56.5 NC_001806.1 + 150699 0.74 0.460388
Target:  5'- gGCCAguCCCGCCC-CCGAGGCGGcccgcccuGUGAg -3'
miRNA:   3'- -CGGU--GGGUGGGuGGUUCUGCCu-------CAUU- -5'
5559 5' -56.5 NC_001806.1 + 147670 0.66 0.863752
Target:  5'- gGCCGgcUCCGCCCcggggGCCGGGGCGcGGGg-- -3'
miRNA:   3'- -CGGU--GGGUGGG-----UGGUUCUGC-CUCauu -5'
5559 5' -56.5 NC_001806.1 + 143570 0.74 0.442001
Target:  5'- cGCCGCCCACCCACCcaccuCGGGa--- -3'
miRNA:   3'- -CGGUGGGUGGGUGGuucu-GCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 139838 0.66 0.856064
Target:  5'- cGCCAggaCCGCCUGCCGc-GCGGAGg-- -3'
miRNA:   3'- -CGGUg--GGUGGGUGGUucUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 138936 0.68 0.78782
Target:  5'- uGCCACUaCACCC-CCGGGGaacCGGAGa-- -3'
miRNA:   3'- -CGGUGG-GUGGGuGGUUCU---GCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 134019 1.08 0.00266
Target:  5'- aGCCACCCACCCACCAAGACGGAGUAAg -3'
miRNA:   3'- -CGGUGGGUGGGUGGUUCUGCCUCAUU- -5'
5559 5' -56.5 NC_001806.1 + 130663 0.66 0.856064
Target:  5'- gGCCACCCGCagcagCGCCAuauuucGGCGGAu--- -3'
miRNA:   3'- -CGGUGGGUGg----GUGGUu-----CUGCCUcauu -5'
5559 5' -56.5 NC_001806.1 + 130488 0.78 0.251928
Target:  5'- cGCUGCCgGCCCaggccGCCGAGACGGAGg-- -3'
miRNA:   3'- -CGGUGGgUGGG-----UGGUUCUGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 128055 0.66 0.863752
Target:  5'- gGCgGCCacgGCCC-CCAGGugGGGGc-- -3'
miRNA:   3'- -CGgUGGg--UGGGuGGUUCugCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 122872 0.66 0.892346
Target:  5'- aGCCGCCgCGCCacgGCCGAGaagaGCGGcgAGUGc -3'
miRNA:   3'- -CGGUGG-GUGGg--UGGUUC----UGCC--UCAUu -5'
5559 5' -56.5 NC_001806.1 + 119298 0.66 0.892346
Target:  5'- cGCCcgcagACCCGCCCAUCGu--CGGGGc-- -3'
miRNA:   3'- -CGG-----UGGGUGGGUGGUucuGCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 119194 0.68 0.759669
Target:  5'- cGCCGcCCCGCCgGCCGcGAaGGAGg-- -3'
miRNA:   3'- -CGGU-GGGUGGgUGGUuCUgCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 118876 0.67 0.814702
Target:  5'- uGCCGCCUacguGCCCGCgGaugcGGugGGGGa-- -3'
miRNA:   3'- -CGGUGGG----UGGGUGgU----UCugCCUCauu -5'
5559 5' -56.5 NC_001806.1 + 116437 0.68 0.778566
Target:  5'- aGCCucguCCCGCCCguguucgaggGCCAAgcGACGGAcGUGc -3'
miRNA:   3'- -CGGu---GGGUGGG----------UGGUU--CUGCCU-CAUu -5'
5559 5' -56.5 NC_001806.1 + 112243 0.67 0.840083
Target:  5'- gGCCGCCUGgCCACCAGGGUGGcccGGg-- -3'
miRNA:   3'- -CGGUGGGUgGGUGGUUCUGCC---UCauu -5'
5559 5' -56.5 NC_001806.1 + 105667 0.67 0.831803
Target:  5'- cCCACCCcaACCC-CCAAGuuCGG-GUGAa -3'
miRNA:   3'- cGGUGGG--UGGGuGGUUCu-GCCuCAUU- -5'
5559 5' -56.5 NC_001806.1 + 103684 0.67 0.831803
Target:  5'- -gCACCCcCCCGCCcuccguggAGGugGGGGUu- -3'
miRNA:   3'- cgGUGGGuGGGUGG--------UUCugCCUCAuu -5'
5559 5' -56.5 NC_001806.1 + 101474 0.66 0.885531
Target:  5'- cGCCAaCCGCCgGgCCGGGACuGGAGc-- -3'
miRNA:   3'- -CGGUgGGUGGgU-GGUUCUG-CCUCauu -5'
5559 5' -56.5 NC_001806.1 + 100653 0.66 0.878491
Target:  5'- cGCCGCUCGgCCACCAGGcuccaGCGGu---- -3'
miRNA:   3'- -CGGUGGGUgGGUGGUUC-----UGCCucauu -5'
5559 5' -56.5 NC_001806.1 + 96765 0.66 0.878491
Target:  5'- cGCUGCCCgACCCGgcCCGAGggucagaacuacACGGAGg-- -3'
miRNA:   3'- -CGGUGGG-UGGGU--GGUUC------------UGCCUCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.