Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5560 | 3' | -61 | NC_001806.1 | + | 142358 | 0.66 | 0.730883 |
Target: 5'- gUGGCUgGCGGCcuGCUUgcgACUGUccagcGCCUGGc -3' miRNA: 3'- gGCCGA-CGCCG--UGGG---UGACA-----CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 135549 | 0.66 | 0.729937 |
Target: 5'- gCGGCUGCcGCAUCCACcgGUcacggacucggccGCCaGGu -3' miRNA: 3'- gGCCGACGcCGUGGGUGa-CA-------------CGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 151525 | 0.66 | 0.711828 |
Target: 5'- gCGGUUGggaCGGCGCCCG-UGgGCCcGGg -3' miRNA: 3'- gGCCGAC---GCCGUGGGUgACaCGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 94173 | 0.66 | 0.711828 |
Target: 5'- -gGcGCUGCGGCGUCguCUGaggccggGCCUGGa -3' miRNA: 3'- ggC-CGACGCCGUGGguGACa------CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 147211 | 0.66 | 0.702202 |
Target: 5'- cCCGGCggcggaagagGCGGCcCCCGCggggGUCgGGg -3' miRNA: 3'- -GGCCGa---------CGCCGuGGGUGaca-CGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 23571 | 0.66 | 0.702202 |
Target: 5'- cCCaGCcacacgGCGGCGCCCGCggccgccGcCCUGGa -3' miRNA: 3'- -GGcCGa-----CGCCGUGGGUGaca----C-GGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 2667 | 0.66 | 0.702202 |
Target: 5'- gCGGCcGCgGGCGCCgCcgUGUGgCUGGg -3' miRNA: 3'- gGCCGaCG-CCGUGG-GugACACgGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 63174 | 0.66 | 0.702202 |
Target: 5'- -aGGUUGUcGUugCCGCggGUGCaCUGGg -3' miRNA: 3'- ggCCGACGcCGugGGUGa-CACG-GACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 42231 | 0.66 | 0.692523 |
Target: 5'- cCCGGCcgccGCGGC-CCCGCgg-GCguaCUGGc -3' miRNA: 3'- -GGCCGa---CGCCGuGGGUGacaCG---GACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 63258 | 0.66 | 0.682796 |
Target: 5'- aCGGCgucGCGGagcCGCCCAaaGUcaaacgucuGCCUGGa -3' miRNA: 3'- gGCCGa--CGCC---GUGGGUgaCA---------CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 22792 | 0.66 | 0.682796 |
Target: 5'- gCCGGCcGCGugGCCguCgaGUGCCUGGc -3' miRNA: 3'- -GGCCGaCGCcgUGGguGa-CACGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 90240 | 0.67 | 0.674009 |
Target: 5'- gCGGCgauuccgacgucgccGUGGCGCCC-CUGgucguggGCCUGa -3' miRNA: 3'- gGCCGa--------------CGCCGUGGGuGACa------CGGACc -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 94718 | 0.67 | 0.663235 |
Target: 5'- aCGaGCUGCGGCGguaccugcCCCACgccGCCgGGc -3' miRNA: 3'- gGC-CGACGCCGU--------GGGUGacaCGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 33355 | 0.67 | 0.663235 |
Target: 5'- cCCGGCUGCaggGGgGCCCGgaGaGCCgcGGc -3' miRNA: 3'- -GGCCGACG---CCgUGGGUgaCaCGGa-CC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 109304 | 0.67 | 0.653415 |
Target: 5'- gCCGGCgaaacgccaGCGGgGCCCACgcggucaaUGUGUUUGa -3' miRNA: 3'- -GGCCGa--------CGCCgUGGGUG--------ACACGGACc -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 3436 | 0.67 | 0.652432 |
Target: 5'- gCGGCagGCGGCcaggcacucgacgGCCaCGCggccgGCCUGGg -3' miRNA: 3'- gGCCGa-CGCCG-------------UGG-GUGaca--CGGACC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 64953 | 0.67 | 0.64358 |
Target: 5'- aCCGGC-GuCGGCGCCCGg---GCCgGGg -3' miRNA: 3'- -GGCCGaC-GCCGUGGGUgacaCGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 22862 | 0.67 | 0.633736 |
Target: 5'- aCGGCgaccugGCGGCcguCCCgggGCUG-GCCgGGg -3' miRNA: 3'- gGCCGa-----CGCCGu--GGG---UGACaCGGaCC- -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 28136 | 0.67 | 0.633736 |
Target: 5'- cCCGGa-GCGaGUACCCGCcG-GCCUGa -3' miRNA: 3'- -GGCCgaCGC-CGUGGGUGaCaCGGACc -5' |
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5560 | 3' | -61 | NC_001806.1 | + | 92898 | 0.67 | 0.633736 |
Target: 5'- -aGGCUGCGGCcgcguggUCCGCgcagGgcggggcggGCCUGGa -3' miRNA: 3'- ggCCGACGCCGu------GGGUGa---Ca--------CGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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