Results 41 - 60 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5561 | 3' | -72.7 | NC_001806.1 | + | 57038 | 0.81 | 0.019447 |
Target: 5'- gGCCGggCCCGGGGCCggGGCCCCCGg -3' miRNA: 3'- gCGGCggGGGCCCCGGgaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 23412 | 0.83 | 0.014464 |
Target: 5'- gCGCCccccuccacGCCCCCGGGGCCCgagcccGCCCCCGc -3' miRNA: 3'- -GCGG---------CGGGGGCCCCGGGac----CGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 26670 | 0.83 | 0.013103 |
Target: 5'- cCGCCGCCCCCc-GGCCCcGGCCCCCa -3' miRNA: 3'- -GCGGCGGGGGccCCGGGaCCGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 70502 | 0.85 | 0.008604 |
Target: 5'- aCGcCCGaCCgCCUGGGGCCCUGGCCCCCc -3' miRNA: 3'- -GC-GGC-GG-GGGCCCCGGGACCGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 30253 | 0.94 | 0.001757 |
Target: 5'- gCGCCGCCUCCGGGGCCC-GGCCCCCGc -3' miRNA: 3'- -GCGGCGGGGGCCCCGGGaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 43775 | 0.77 | 0.038646 |
Target: 5'- aCGCCGCCCCCGGaGGUUacgCUGGCgCCUGc -3' miRNA: 3'- -GCGGCGGGGGCC-CCGG---GACCGgGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 72134 | 0.77 | 0.038646 |
Target: 5'- uCGCCGgC-CCGuGGGCCCUGcGCCCCCu -3' miRNA: 3'- -GCGGCgGgGGC-CCCGGGAC-CGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 144968 | 0.74 | 0.067463 |
Target: 5'- gGCgGCCcggCCCGGGGCCCcGGCggacccaaggggCCCCGg -3' miRNA: 3'- gCGgCGG---GGGCCCCGGGaCCG------------GGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 21815 | 0.74 | 0.062767 |
Target: 5'- aCGCCGCCCCCGcccGGGCCacc-CCCCCu -3' miRNA: 3'- -GCGGCGGGGGC---CCCGGgaccGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 39817 | 0.74 | 0.062767 |
Target: 5'- gCGCCaGCCCCCguugggGGGGUgCgucggGGCCCCCa -3' miRNA: 3'- -GCGG-CGGGGG------CCCCGgGa----CCGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 120865 | 0.74 | 0.062767 |
Target: 5'- gGCgGCCCCUGGcGCcgCCUGGuCCCCCGg -3' miRNA: 3'- gCGgCGGGGGCCcCG--GGACC-GGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 106675 | 0.74 | 0.061273 |
Target: 5'- cCGCgGacgaaaacCCCCCGGGGgcucuuCCCgGGCCCCCGg -3' miRNA: 3'- -GCGgC--------GGGGGCCCC------GGGaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 132893 | 0.75 | 0.058387 |
Target: 5'- gCGCCcaGCUCCUGGcGGCCCUGGCcgaCCUCGg -3' miRNA: 3'- -GCGG--CGGGGGCC-CCGGGACCG---GGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 65459 | 0.75 | 0.054304 |
Target: 5'- cCGCgGCCCCCGGGuCCUgggGGCgCCCGc -3' miRNA: 3'- -GCGgCGGGGGCCCcGGGa--CCGgGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 66846 | 0.76 | 0.050499 |
Target: 5'- gCGCCGCCuCCUGGGGCCCgGGCacaCGg -3' miRNA: 3'- -GCGGCGG-GGGCCCCGGGaCCGgggGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 23557 | 0.76 | 0.049289 |
Target: 5'- gGCaGCCCCCGGGGCCCagccacacggcGGCgCCCGc -3' miRNA: 3'- gCGgCGGGGGCCCCGGGa----------CCGgGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 2716 | 0.76 | 0.048108 |
Target: 5'- aGCCGCCCagGGGGUCggGGCCCUCGg -3' miRNA: 3'- gCGGCGGGggCCCCGGgaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 30278 | 0.76 | 0.046954 |
Target: 5'- gCGCCccgGCCCCCGGGGCggagCC-GGCCgCCCGc -3' miRNA: 3'- -GCGG---CGGGGGCCCCG----GGaCCGG-GGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 22875 | 0.76 | 0.046954 |
Target: 5'- gGCCGUCCcggggcuggCCGGGGCCC-GGCCCgCCa -3' miRNA: 3'- gCGGCGGG---------GGCCCCGGGaCCGGG-GGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 4388 | 0.76 | 0.044727 |
Target: 5'- uCGCCGCCgCCCGGGGCUUgggcgcGGCCUCgGa -3' miRNA: 3'- -GCGGCGG-GGGCCCCGGGa-----CCGGGGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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