miRNA display CGI


Results 41 - 60 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 26407 0.8 0.024268
Target:  5'- cCGCCGCCCCCGGccGCCCgGGCCCaCGg -3'
miRNA:   3'- -GCGGCGGGGGCCc-CGGGaCCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 30215 0.78 0.030265
Target:  5'- cCGCgCGCCCCCGcGcGGCCgUGGCCCCg- -3'
miRNA:   3'- -GCG-GCGGGGGC-C-CCGGgACCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 67488 0.78 0.031015
Target:  5'- gGCCGCCCuCCGGGGUCCcGaCCCCCu -3'
miRNA:   3'- gCGGCGGG-GGCCCCGGGaCcGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 3668 0.78 0.032571
Target:  5'- gCGCCGgCgCCGGGGCUCcccgcGGCCCCCGu -3'
miRNA:   3'- -GCGGCgGgGGCCCCGGGa----CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 27053 0.77 0.036805
Target:  5'- gGCCGUgCCUGGGGCCCgaGGCCcgugCCCGg -3'
miRNA:   3'- gCGGCGgGGGCCCCGGGa-CCGG----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 43775 0.77 0.038646
Target:  5'- aCGCCGCCCCCGGaGGUUacgCUGGCgCCUGc -3'
miRNA:   3'- -GCGGCGGGGGCC-CCGG---GACCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132501 1.07 0.000183
Target:  5'- aCGCCGCCCCCGGGGCCCUGGCCCCCGu -3'
miRNA:   3'- -GCGGCGGGGGCCCCGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 4388 0.76 0.044727
Target:  5'- uCGCCGCCgCCCGGGGCUUgggcgcGGCCUCgGa -3'
miRNA:   3'- -GCGGCGG-GGGCCCCGGGa-----CCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 22875 0.76 0.046954
Target:  5'- gGCCGUCCcggggcuggCCGGGGCCC-GGCCCgCCa -3'
miRNA:   3'- gCGGCGGG---------GGCCCCGGGaCCGGG-GGc -5'
5561 3' -72.7 NC_001806.1 + 30278 0.76 0.046954
Target:  5'- gCGCCccgGCCCCCGGGGCggagCC-GGCCgCCCGc -3'
miRNA:   3'- -GCGG---CGGGGGCCCCG----GGaCCGG-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 2716 0.76 0.048108
Target:  5'- aGCCGCCCagGGGGUCggGGCCCUCGg -3'
miRNA:   3'- gCGGCGGGggCCCCGGgaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 23557 0.76 0.049289
Target:  5'- gGCaGCCCCCGGGGCCCagccacacggcGGCgCCCGc -3'
miRNA:   3'- gCGgCGGGGGCCCCGGGa----------CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 66846 0.76 0.050499
Target:  5'- gCGCCGCCuCCUGGGGCCCgGGCacaCGg -3'
miRNA:   3'- -GCGGCGG-GGGCCCCGGGaCCGgggGC- -5'
5561 3' -72.7 NC_001806.1 + 65459 0.75 0.054304
Target:  5'- cCGCgGCCCCCGGGuCCUgggGGCgCCCGc -3'
miRNA:   3'- -GCGgCGGGGGCCCcGGGa--CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132893 0.75 0.058387
Target:  5'- gCGCCcaGCUCCUGGcGGCCCUGGCcgaCCUCGg -3'
miRNA:   3'- -GCGG--CGGGGGCC-CCGGGACCG---GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 106675 0.74 0.061273
Target:  5'- cCGCgGacgaaaacCCCCCGGGGgcucuuCCCgGGCCCCCGg -3'
miRNA:   3'- -GCGgC--------GGGGGCCCC------GGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 120865 0.74 0.062767
Target:  5'- gGCgGCCCCUGGcGCcgCCUGGuCCCCCGg -3'
miRNA:   3'- gCGgCGGGGGCCcCG--GGACC-GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 39817 0.74 0.062767
Target:  5'- gCGCCaGCCCCCguugggGGGGUgCgucggGGCCCCCa -3'
miRNA:   3'- -GCGG-CGGGGG------CCCCGgGa----CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 21815 0.74 0.062767
Target:  5'- aCGCCGCCCCCGcccGGGCCacc-CCCCCu -3'
miRNA:   3'- -GCGGCGGGGGC---CCCGGgaccGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 144968 0.74 0.067463
Target:  5'- gGCgGCCcggCCCGGGGCCCcGGCggacccaaggggCCCCGg -3'
miRNA:   3'- gCGgCGG---GGGCCCCGGGaCCG------------GGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.