miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 73206 0.66 0.239977
Target:  5'- uCGCCcgaGCCCCCGGGcgcagaccucGCCCagcuguucgaGGCCCaCCc -3'
miRNA:   3'- -GCGG---CGGGGGCCC----------CGGGa---------CCGGG-GGc -5'
5561 3' -72.7 NC_001806.1 + 151254 0.66 0.245742
Target:  5'- -cCCGCCCCCcGGGCCCacgccgggcggugggGGCCggggCCGg -3'
miRNA:   3'- gcGGCGGGGGcCCCGGGa--------------CCGGg---GGC- -5'
5561 3' -72.7 NC_001806.1 + 125299 0.66 0.250543
Target:  5'- aG-CGUCCCUGG-GCCCUGGCCgaggacacCCCu -3'
miRNA:   3'- gCgGCGGGGGCCcCGGGACCGG--------GGGc -5'
5561 3' -72.7 NC_001806.1 + 20364 0.66 0.250543
Target:  5'- gGCCGCCCgCCGucccguuGGUCCcGGCgUCCGg -3'
miRNA:   3'- gCGGCGGG-GGCc------CCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 150869 0.66 0.239977
Target:  5'- gGCCGgCUCCGcGGGCCagGGCCCg-- -3'
miRNA:   3'- gCGGCgGGGGC-CCCGGgaCCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 28601 0.66 0.255968
Target:  5'- gGUCGCCgUguUGGGGgCgUGGUCCCCa -3'
miRNA:   3'- gCGGCGGgG--GCCCCgGgACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 21581 0.66 0.261489
Target:  5'- uCGCCGCgCCCGccGGCCCa-GCCgCCGc -3'
miRNA:   3'- -GCGGCGgGGGCc-CCGGGacCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 88969 0.66 0.255968
Target:  5'- aCGCCGCCCCacaGGcgcgagcgccgcGGCCagaaGCCgCCCGa -3'
miRNA:   3'- -GCGGCGGGGg--CC------------CCGGgac-CGG-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 75273 0.66 0.255968
Target:  5'- gGCCGCCagcgaCCCGGccucccCCCUGGCCUUCc -3'
miRNA:   3'- gCGGCGG-----GGGCCcc----GGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 112131 0.66 0.250543
Target:  5'- gGCCGUCCUCGGGGCgUUugagcgcggcacGGCCgaCCa -3'
miRNA:   3'- gCGGCGGGGGCCCCGgGA------------CCGGg-GGc -5'
5561 3' -72.7 NC_001806.1 + 95420 0.66 0.239977
Target:  5'- aGaCCGUCgCCGcGGGCCCggggGGCaggggCCCGa -3'
miRNA:   3'- gC-GGCGGgGGC-CCCGGGa---CCGg----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 11357 0.66 0.25433
Target:  5'- aGCCGCCCCaGcGGGCUCcgacucuucggcgaUGGCCgUCa -3'
miRNA:   3'- gCGGCGGGGgC-CCCGGG--------------ACCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 44313 0.66 0.239977
Target:  5'- gCGCCGgCCUCGaGGGUCaCaGGaaCCCCCGu -3'
miRNA:   3'- -GCGGCgGGGGC-CCCGG-GaCC--GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 119604 0.66 0.245213
Target:  5'- aGCC-CCCCggCGGGGgCCgcuuugUGGCCCCa- -3'
miRNA:   3'- gCGGcGGGG--GCCCCgGG------ACCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 119252 0.66 0.234836
Target:  5'- aGCgCGUCCCCGcGuccgcagcccuuGGCCC-GGCCCCaCGc -3'
miRNA:   3'- gCG-GCGGGGGC-C------------CCGGGaCCGGGG-GC- -5'
5561 3' -72.7 NC_001806.1 + 149640 0.66 0.250543
Target:  5'- uGgCGCCCCaacauGGcGCCC-GGCUCCCGu -3'
miRNA:   3'- gCgGCGGGGg----CCcCGGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 57361 0.66 0.245213
Target:  5'- gGCCGUCCuCCGGGgacacgGCCCggUGGCUgUCGu -3'
miRNA:   3'- gCGGCGGG-GGCCC------CGGG--ACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 73041 0.66 0.255968
Target:  5'- gGCaaaaCCCCCgucGGGGCCgC-GGUCCCCGc -3'
miRNA:   3'- gCGgc--GGGGG---CCCCGG-GaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 22779 0.66 0.267107
Target:  5'- gCGCCGCgCCCaGGccGGCCgCgUGGCCgUCGa -3'
miRNA:   3'- -GCGGCGgGGG-CC--CCGG-G-ACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 106716 0.67 0.22483
Target:  5'- gGCgGCCCCCGguaucGGGUCUUuguccuagGGUCCCUGa -3'
miRNA:   3'- gCGgCGGGGGC-----CCCGGGA--------CCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.