miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 35774 0.73 0.083666
Target:  5'- aGCCGU--CCGGGGCUUUGGCgCCCGa -3'
miRNA:   3'- gCGGCGggGGCCCCGGGACCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 112243 0.73 0.084466
Target:  5'- gGCCGCCuggccaccaggguggCCCGGGcGaCCCUGGUCgCCGa -3'
miRNA:   3'- gCGGCGG---------------GGGCCC-C-GGGACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 106349 0.73 0.085477
Target:  5'- -aCCGCCCCCccgaccgccgguuGGGGCCCggcGGCaCCCGa -3'
miRNA:   3'- gcGGCGGGGG-------------CCCCGGGa--CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 147677 0.73 0.085681
Target:  5'- -uCCGCCCCgGGGGCCggGGCgcgggggcgggCCCCGg -3'
miRNA:   3'- gcGGCGGGGgCCCCGGgaCCG-----------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 53241 0.72 0.089849
Target:  5'- cCGCCcuauuuuccCCCCCGGGccGCaCCgGGCCCCCGc -3'
miRNA:   3'- -GCGGc--------GGGGGCCC--CG-GGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 107035 0.72 0.089849
Target:  5'- gGCCGCCCgCGGGGCCgCgGGCUgugCCgCGg -3'
miRNA:   3'- gCGGCGGGgGCCCCGG-GaCCGG---GG-GC- -5'
5561 3' -72.7 NC_001806.1 + 7868 0.72 0.09421
Target:  5'- aCGUCGCCCCUGuGGCCCUGGCggaCGg -3'
miRNA:   3'- -GCGGCGGGGGCcCCGGGACCGgggGC- -5'
5561 3' -72.7 NC_001806.1 + 20166 0.72 0.09421
Target:  5'- cCGCCGCCC---GGGCCC--GCCCCCGg -3'
miRNA:   3'- -GCGGCGGGggcCCCGGGacCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 147039 0.72 0.101129
Target:  5'- gGCCGCCCgCGGGGac--GGCCCCgGa -3'
miRNA:   3'- gCGGCGGGgGCCCCgggaCCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 3130 0.71 0.10354
Target:  5'- cCGCgGCagCgCGGGGCCCaGGgCCCCGg -3'
miRNA:   3'- -GCGgCGg-GgGCCCCGGGaCCgGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 143679 0.71 0.106005
Target:  5'- -cCCGCCCCCGGGaCCCcacauauaaGCCCCCa -3'
miRNA:   3'- gcGGCGGGGGCCCcGGGac-------CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 70156 0.71 0.108525
Target:  5'- gGCCGCCCggGGcGGCCUcGGCCCCa- -3'
miRNA:   3'- gCGGCGGGggCC-CCGGGaCCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 32964 0.71 0.111101
Target:  5'- gGCCgggGCCCCUuGGGUCCgccggGGCCCCgGg -3'
miRNA:   3'- gCGG---CGGGGGcCCCGGGa----CCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 131482 0.71 0.111101
Target:  5'- uGCCGgaacgcaCCgaGGGGCCaaguUGGCCCCCGg -3'
miRNA:   3'- gCGGCg------GGggCCCCGGg---ACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 78301 0.71 0.113468
Target:  5'- -aCCGaCCCCCuGGcGCCCUGGCgcucgguCCCCGa -3'
miRNA:   3'- gcGGC-GGGGGcCC-CGGGACCG-------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 5586 0.71 0.113734
Target:  5'- aCGCCgGCaCgCCgGGGGCCCgUGGCCgcggCCCGu -3'
miRNA:   3'- -GCGG-CG-G-GGgCCCCGGG-ACCGG----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 125842 0.71 0.113734
Target:  5'- gCGCCgcggGCCCCCGGccgccgcggacGCCgUGGCgCCCCGg -3'
miRNA:   3'- -GCGG----CGGGGGCCc----------CGGgACCG-GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 46173 0.71 0.114803
Target:  5'- -aCCGCCCCCcGGGCCCcccgaacccagcgggUggcgacuaaGGCCCCCGc -3'
miRNA:   3'- gcGGCGGGGGcCCCGGG---------------A---------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 91053 0.71 0.116425
Target:  5'- gCGCCugGCCUCCGucauGGccggagacgccGCCCUGGCCCUCGa -3'
miRNA:   3'- -GCGG--CGGGGGC----CC-----------CGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 26235 0.71 0.117518
Target:  5'- gCGCgGCCCUuuaaagcgguggcggCGGGcaGCCCgGGCCCCCc -3'
miRNA:   3'- -GCGgCGGGG---------------GCCC--CGGGaCCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.