miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 23557 0.76 0.049289
Target:  5'- gGCaGCCCCCGGGGCCCagccacacggcGGCgCCCGc -3'
miRNA:   3'- gCGgCGGGGGCCCCGGGa----------CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 66846 0.76 0.050499
Target:  5'- gCGCCGCCuCCUGGGGCCCgGGCacaCGg -3'
miRNA:   3'- -GCGGCGG-GGGCCCCGGGaCCGgggGC- -5'
5561 3' -72.7 NC_001806.1 + 65459 0.75 0.054304
Target:  5'- cCGCgGCCCCCGGGuCCUgggGGCgCCCGc -3'
miRNA:   3'- -GCGgCGGGGGCCCcGGGa--CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132893 0.75 0.058387
Target:  5'- gCGCCcaGCUCCUGGcGGCCCUGGCcgaCCUCGg -3'
miRNA:   3'- -GCGG--CGGGGGCC-CCGGGACCG---GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 106675 0.74 0.061273
Target:  5'- cCGCgGacgaaaacCCCCCGGGGgcucuuCCCgGGCCCCCGg -3'
miRNA:   3'- -GCGgC--------GGGGGCCCC------GGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 21815 0.74 0.062767
Target:  5'- aCGCCGCCCCCGcccGGGCCacc-CCCCCu -3'
miRNA:   3'- -GCGGCGGGGGC---CCCGGgaccGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 39817 0.74 0.062767
Target:  5'- gCGCCaGCCCCCguugggGGGGUgCgucggGGCCCCCa -3'
miRNA:   3'- -GCGG-CGGGGG------CCCCGgGa----CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 120865 0.74 0.062767
Target:  5'- gGCgGCCCCUGGcGCcgCCUGGuCCCCCGg -3'
miRNA:   3'- gCGgCGGGGGCCcCG--GGACC-GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 144968 0.74 0.067463
Target:  5'- gGCgGCCcggCCCGGGGCCCcGGCggacccaaggggCCCCGg -3'
miRNA:   3'- gCGgCGG---GGGCCCCGGGaCCG------------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 38697 0.74 0.069102
Target:  5'- -uCCGCCCCCcGGGCgg-GGCCCCCGc -3'
miRNA:   3'- gcGGCGGGGGcCCCGggaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 26519 0.74 0.069102
Target:  5'- cCGCCGCCCCCc--GCCggugGGCCCCCGc -3'
miRNA:   3'- -GCGGCGGGGGcccCGGga--CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 4735 0.74 0.07078
Target:  5'- uCGCgGCCCcgggCCGGGGCCC-GGUCgCCGg -3'
miRNA:   3'- -GCGgCGGG----GGCCCCGGGaCCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 135787 0.74 0.07078
Target:  5'- gCGcCCGCCCCCccuGGUCCUGGCCCgCa -3'
miRNA:   3'- -GC-GGCGGGGGcc-CCGGGACCGGGgGc -5'
5561 3' -72.7 NC_001806.1 + 19344 0.74 0.072496
Target:  5'- -aCCGCCCCCcaagccuccggGGGGCCCUacGGCCaCCGa -3'
miRNA:   3'- gcGGCGGGGG-----------CCCCGGGA--CCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 5839 0.73 0.074253
Target:  5'- gGCCGUCCCCGGGcCCCccGGUCCCg- -3'
miRNA:   3'- gCGGCGGGGGCCCcGGGa-CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 27858 0.73 0.074253
Target:  5'- gGCCGCCCCgCGGuGGgCCUGccuCCCCUGg -3'
miRNA:   3'- gCGGCGGGG-GCC-CCgGGACc--GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 2931 0.73 0.074253
Target:  5'- cCGCCGCCUCCGGGcGgCCgGGCCgggCCGg -3'
miRNA:   3'- -GCGGCGGGGGCCC-CgGGaCCGGg--GGC- -5'
5561 3' -72.7 NC_001806.1 + 72595 0.73 0.079014
Target:  5'- uCGCCGCCaccgaCCcGGGCCCgucgcgacgacagGGCCUCCGa -3'
miRNA:   3'- -GCGGCGGg----GGcCCCGGGa------------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 150118 0.73 0.079771
Target:  5'- -cCCGUCCCCGGGGaccaaCCCgGcGCCCCCa -3'
miRNA:   3'- gcGGCGGGGGCCCC-----GGGaC-CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 23513 0.73 0.081697
Target:  5'- gCGCCgGCCCgCCGaGGGCCCcGaCCCCCu -3'
miRNA:   3'- -GCGG-CGGG-GGC-CCCGGGaCcGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.