miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 4388 0.76 0.044727
Target:  5'- uCGCCGCCgCCCGGGGCUUgggcgcGGCCUCgGa -3'
miRNA:   3'- -GCGGCGG-GGGCCCCGGGa-----CCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 4735 0.74 0.07078
Target:  5'- uCGCgGCCCcgggCCGGGGCCC-GGUCgCCGg -3'
miRNA:   3'- -GCGgCGGG----GGCCCCGGGaCCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 4949 0.66 0.245213
Target:  5'- uGcCCGCCgCgGGGGCCCUcccGuCCCgCCGg -3'
miRNA:   3'- gC-GGCGGgGgCCCCGGGAc--C-GGG-GGC- -5'
5561 3' -72.7 NC_001806.1 + 5529 0.68 0.172165
Target:  5'- cCGCC-CCCCCGgcGGGCCCa---CCCCGa -3'
miRNA:   3'- -GCGGcGGGGGC--CCCGGGaccgGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 5586 0.71 0.113734
Target:  5'- aCGCCgGCaCgCCgGGGGCCCgUGGCCgcggCCCGu -3'
miRNA:   3'- -GCGG-CG-G-GGgCCCCGGG-ACCGG----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 5839 0.73 0.074253
Target:  5'- gGCCGUCCCCGGGcCCCccGGUCCCg- -3'
miRNA:   3'- gCGGCGGGGGCCCcGGGa-CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 5946 0.68 0.184197
Target:  5'- gGaCCGCCCCaagGGGGCgg-GGCCgCCGg -3'
miRNA:   3'- gC-GGCGGGGg--CCCCGggaCCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 6068 0.7 0.12486
Target:  5'- gCGCCGgCCCCGGGGgCg-GGCCCg-- -3'
miRNA:   3'- -GCGGCgGGGGCCCCgGgaCCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 7270 0.66 0.267107
Target:  5'- cCGCgUGuUCCCCGGGaGCCCcgGGUuccgcgaccaCCCCGa -3'
miRNA:   3'- -GCG-GC-GGGGGCCC-CGGGa-CCG----------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 7403 0.69 0.160839
Target:  5'- aGCCccggucUCCCCGGGaGCCCcGGUcuCCCCGg -3'
miRNA:   3'- gCGGc-----GGGGGCCC-CGGGaCCG--GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 7789 0.69 0.160473
Target:  5'- -cCCGCCCCCggcuacaGGGGCCauguugGGCCgCCa -3'
miRNA:   3'- gcGGCGGGGG-------CCCCGGga----CCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 7868 0.72 0.09421
Target:  5'- aCGUCGCCCCUGuGGCCCUGGCggaCGg -3'
miRNA:   3'- -GCGGCGGGGGCcCCGGGACCGgggGC- -5'
5561 3' -72.7 NC_001806.1 + 11357 0.66 0.25433
Target:  5'- aGCCGCCCCaGcGGGCUCcgacucuucggcgaUGGCCgUCa -3'
miRNA:   3'- gCGGCGGGGgC-CCCGGG--------------ACCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 19344 0.74 0.072496
Target:  5'- -aCCGCCCCCcaagccuccggGGGGCCCUacGGCCaCCGa -3'
miRNA:   3'- gcGGCGGGGG-----------CCCCGGGA--CCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 19903 0.66 0.255968
Target:  5'- uCGUCggagGCCCCCGGGGUgCgu-CCCCUGu -3'
miRNA:   3'- -GCGG----CGGGGGCCCCGgGaccGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 20166 0.72 0.09421
Target:  5'- cCGCCGCCC---GGGCCC--GCCCCCGg -3'
miRNA:   3'- -GCGGCGGGggcCCCGGGacCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 20364 0.66 0.250543
Target:  5'- gGCCGCCCgCCGucccguuGGUCCcGGCgUCCGg -3'
miRNA:   3'- gCGGCGGG-GGCc------CCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 20457 0.71 0.118898
Target:  5'- cCGCCGaaCCgggaaguCGGGGCCCgGGCCCCg- -3'
miRNA:   3'- -GCGGCggGG-------GCCCCGGGaCCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 20768 0.7 0.130794
Target:  5'- cCGCCgGCCCCUGGGacuauaugaGCCCgaGGaCgCCCCGa -3'
miRNA:   3'- -GCGG-CGGGGGCCC---------CGGGa-CC-G-GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 21133 0.68 0.180106
Target:  5'- gCGCCccgGCUCCCcGGGCCCcaccgacgGGCCgCCGc -3'
miRNA:   3'- -GCGG---CGGGGGcCCCGGGa-------CCGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.