miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 30038 0.66 0.245213
Target:  5'- gGCgGCCga-GGGGCCggacgGGCCCCCu -3'
miRNA:   3'- gCGgCGGgggCCCCGGga---CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 95420 0.66 0.239977
Target:  5'- aGaCCGUCgCCGcGGGCCCggggGGCaggggCCCGa -3'
miRNA:   3'- gC-GGCGGgGGC-CCCGGGa---CCGg----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 143528 0.66 0.250543
Target:  5'- -cCCGCCcaCCCGGcccGGCCC-GGCCcggCCCGg -3'
miRNA:   3'- gcGGCGG--GGGCC---CCGGGaCCGG---GGGC- -5'
5561 3' -72.7 NC_001806.1 + 65270 0.66 0.273398
Target:  5'- aGCCGCCaCCCaGGGUgaagCggggaggaggaggggGGCCCCCa -3'
miRNA:   3'- gCGGCGG-GGGcCCCGg---Ga--------------CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 54106 0.66 0.259823
Target:  5'- aGCCgaGCCcgcaugggggguguCCCGGGGCCCaggGGCCgguaggcguguUCCGa -3'
miRNA:   3'- gCGG--CGG--------------GGGCCCCGGGa--CCGG-----------GGGC- -5'
5561 3' -72.7 NC_001806.1 + 121910 0.66 0.250543
Target:  5'- aGuuGCCccaccguugCCCGGGccguuGCCCgGGCCUCCu -3'
miRNA:   3'- gCggCGG---------GGGCCC-----CGGGaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 73507 0.66 0.250543
Target:  5'- uGCUGCCCUggaaaacggccgUGGGGgacuUUCUGGCCUCCa -3'
miRNA:   3'- gCGGCGGGG------------GCCCC----GGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 149640 0.66 0.250543
Target:  5'- uGgCGCCCCaacauGGcGCCC-GGCUCCCGu -3'
miRNA:   3'- gCgGCGGGGg----CCcCGGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 44313 0.66 0.239977
Target:  5'- gCGCCGgCCUCGaGGGUCaCaGGaaCCCCCGu -3'
miRNA:   3'- -GCGGCgGGGGC-CCCGG-GaCC--GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 125299 0.66 0.250543
Target:  5'- aG-CGUCCCUGG-GCCCUGGCCgaggacacCCCu -3'
miRNA:   3'- gCgGCGGGGGCCcCGGGACCGG--------GGGc -5'
5561 3' -72.7 NC_001806.1 + 146706 0.66 0.250006
Target:  5'- aGgCGCCCacuaGGGuGCCCUGGUcgaacagcauguuCCCCa -3'
miRNA:   3'- gCgGCGGGgg--CCC-CGGGACCG-------------GGGGc -5'
5561 3' -72.7 NC_001806.1 + 88969 0.66 0.255968
Target:  5'- aCGCCGCCCCacaGGcgcgagcgccgcGGCCagaaGCCgCCCGa -3'
miRNA:   3'- -GCGGCGGGGg--CC------------CCGGgac-CGG-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 20364 0.66 0.250543
Target:  5'- gGCCGCCCgCCGucccguuGGUCCcGGCgUCCGg -3'
miRNA:   3'- gCGGCGGG-GGCc------CCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 44425 0.66 0.238425
Target:  5'- aCGaCCGCCCCaacacauagcaggcCGcGGGCCC-GGCgUCCGc -3'
miRNA:   3'- -GC-GGCGGGG--------------GC-CCCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 119252 0.66 0.234836
Target:  5'- aGCgCGUCCCCGcGuccgcagcccuuGGCCC-GGCCCCaCGc -3'
miRNA:   3'- gCG-GCGGGGGC-C------------CCGGGaCCGGGG-GC- -5'
5561 3' -72.7 NC_001806.1 + 19903 0.66 0.255968
Target:  5'- uCGUCggagGCCCCCGGGGUgCgu-CCCCUGu -3'
miRNA:   3'- -GCGG----CGGGGGCCCCGgGaccGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 116917 0.66 0.259269
Target:  5'- uCGUCGCCuggcugaCCCacgcgggccaacuaGGagacaccuuGGCCCUGGCUCCCGu -3'
miRNA:   3'- -GCGGCGG-------GGG--------------CC---------CCGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 11357 0.66 0.25433
Target:  5'- aGCCGCCCCaGcGGGCUCcgacucuucggcgaUGGCCgUCa -3'
miRNA:   3'- gCGGCGGGGgC-CCCGGG--------------ACCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 37597 0.66 0.255968
Target:  5'- gGcCCGCCagcaCCGGGGCCCaggGGCUauUCgCGg -3'
miRNA:   3'- gC-GGCGGg---GGCCCCGGGa--CCGG--GG-GC- -5'
5561 3' -72.7 NC_001806.1 + 113066 0.66 0.234836
Target:  5'- aGCCGCCaauccguaCGGGGCgUacgUGGCggCCCCGg -3'
miRNA:   3'- gCGGCGGgg------GCCCCGgG---ACCG--GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.