miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 76816 0.66 0.255968
Target:  5'- gCGCgGCCagCGGcgacGGCCCgGGCCUCCu -3'
miRNA:   3'- -GCGgCGGggGCC----CCGGGaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 20364 0.66 0.250543
Target:  5'- gGCCGCCCgCCGucccguuGGUCCcGGCgUCCGg -3'
miRNA:   3'- gCGGCGGG-GGCc------CCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 121657 0.66 0.250543
Target:  5'- gCGUCGCCCCgugucUGuGGGCCaagaUGGCCCa-- -3'
miRNA:   3'- -GCGGCGGGG-----GC-CCCGGg---ACCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 70767 0.66 0.239977
Target:  5'- aGCUGCUgUCGGGaGaCCaGGUCCCCGg -3'
miRNA:   3'- gCGGCGGgGGCCC-CgGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 143528 0.66 0.250543
Target:  5'- -cCCGCCcaCCCGGcccGGCCC-GGCCcggCCCGg -3'
miRNA:   3'- gcGGCGG--GGGCC---CCGGGaCCGG---GGGC- -5'
5561 3' -72.7 NC_001806.1 + 19903 0.66 0.255968
Target:  5'- uCGUCggagGCCCCCGGGGUgCgu-CCCCUGu -3'
miRNA:   3'- -GCGG----CGGGGGCCCCGgGaccGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 75273 0.66 0.255968
Target:  5'- gGCCGCCagcgaCCCGGccucccCCCUGGCCUUCc -3'
miRNA:   3'- gCGGCGG-----GGGCCcc----GGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 73041 0.66 0.255968
Target:  5'- gGCaaaaCCCCCgucGGGGCCgC-GGUCCCCGc -3'
miRNA:   3'- gCGgc--GGGGG---CCCCGG-GaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 79271 0.66 0.250006
Target:  5'- gGCggaggGCUCgUUGGGGCCCggaagccUGGCCCCCa -3'
miRNA:   3'- gCGg----CGGG-GGCCCCGGG-------ACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 125299 0.66 0.250543
Target:  5'- aG-CGUCCCUGG-GCCCUGGCCgaggacacCCCu -3'
miRNA:   3'- gCgGCGGGGGCCcCGGGACCGG--------GGGc -5'
5561 3' -72.7 NC_001806.1 + 146706 0.66 0.250006
Target:  5'- aGgCGCCCacuaGGGuGCCCUGGUcgaacagcauguuCCCCa -3'
miRNA:   3'- gCgGCGGGgg--CCC-CGGGACCG-------------GGGGc -5'
5561 3' -72.7 NC_001806.1 + 119252 0.66 0.234836
Target:  5'- aGCgCGUCCCCGcGuccgcagcccuuGGCCC-GGCCCCaCGc -3'
miRNA:   3'- gCG-GCGGGGGC-C------------CCGGGaCCGGGG-GC- -5'
5561 3' -72.7 NC_001806.1 + 120096 0.66 0.244685
Target:  5'- gGCgUGCCUCC-GGGCCCUGGgCCaggccauCCGg -3'
miRNA:   3'- gCG-GCGGGGGcCCCGGGACCgGG-------GGC- -5'
5561 3' -72.7 NC_001806.1 + 58055 0.66 0.245213
Target:  5'- gGCuCGCUCCCaGaGGCCCgggaGGCCgagcuCCCGg -3'
miRNA:   3'- gCG-GCGGGGGcC-CCGGGa---CCGG-----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 28601 0.66 0.255968
Target:  5'- gGUCGCCgUguUGGGGgCgUGGUCCCCa -3'
miRNA:   3'- gCGGCGGgG--GCCCCgGgACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 136348 0.66 0.258717
Target:  5'- gCGCCaGCUcaaaaaaCCCGGGGCCggcgcgcuccgcGGCCUCCGc -3'
miRNA:   3'- -GCGG-CGG-------GGGCCCCGGga----------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 11357 0.66 0.25433
Target:  5'- aGCCGCCCCaGcGGGCUCcgacucuucggcgaUGGCCgUCa -3'
miRNA:   3'- gCGGCGGGGgC-CCCGGG--------------ACCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 150869 0.66 0.239977
Target:  5'- gGCCGgCUCCGcGGGCCagGGCCCg-- -3'
miRNA:   3'- gCGGCgGGGGC-CCCGGgaCCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 44425 0.66 0.238425
Target:  5'- aCGaCCGCCCCaacacauagcaggcCGcGGGCCC-GGCgUCCGc -3'
miRNA:   3'- -GC-GGCGGGG--------------GC-CCCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 73507 0.66 0.250543
Target:  5'- uGCUGCCCUggaaaacggccgUGGGGgacuUUCUGGCCUCCa -3'
miRNA:   3'- gCGGCGGGG------------GCCCC----GGGACCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.