Results 21 - 40 of 246 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5561 | 3' | -72.7 | NC_001806.1 | + | 22875 | 0.76 | 0.046954 |
Target: 5'- gGCCGUCCcggggcuggCCGGGGCCC-GGCCCgCCa -3' miRNA: 3'- gCGGCGGG---------GGCCCCGGGaCCGGG-GGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 4388 | 0.76 | 0.044727 |
Target: 5'- uCGCCGCCgCCCGGGGCUUgggcgcGGCCUCgGa -3' miRNA: 3'- -GCGGCGG-GGGCCCCGGGa-----CCGGGGgC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 65459 | 0.75 | 0.054304 |
Target: 5'- cCGCgGCCCCCGGGuCCUgggGGCgCCCGc -3' miRNA: 3'- -GCGgCGGGGGCCCcGGGa--CCGgGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 132893 | 0.75 | 0.058387 |
Target: 5'- gCGCCcaGCUCCUGGcGGCCCUGGCcgaCCUCGg -3' miRNA: 3'- -GCGG--CGGGGGCC-CCGGGACCG---GGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 26519 | 0.74 | 0.069102 |
Target: 5'- cCGCCGCCCCCc--GCCggugGGCCCCCGc -3' miRNA: 3'- -GCGGCGGGGGcccCGGga--CCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 135787 | 0.74 | 0.07078 |
Target: 5'- gCGcCCGCCCCCccuGGUCCUGGCCCgCa -3' miRNA: 3'- -GC-GGCGGGGGcc-CCGGGACCGGGgGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 4735 | 0.74 | 0.07078 |
Target: 5'- uCGCgGCCCcgggCCGGGGCCC-GGUCgCCGg -3' miRNA: 3'- -GCGgCGGG----GGCCCCGGGaCCGGgGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 19344 | 0.74 | 0.072496 |
Target: 5'- -aCCGCCCCCcaagccuccggGGGGCCCUacGGCCaCCGa -3' miRNA: 3'- gcGGCGGGGG-----------CCCCGGGA--CCGGgGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 38697 | 0.74 | 0.069102 |
Target: 5'- -uCCGCCCCCcGGGCgg-GGCCCCCGc -3' miRNA: 3'- gcGGCGGGGGcCCCGggaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 144968 | 0.74 | 0.067463 |
Target: 5'- gGCgGCCcggCCCGGGGCCCcGGCggacccaaggggCCCCGg -3' miRNA: 3'- gCGgCGG---GGGCCCCGGGaCCG------------GGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 21815 | 0.74 | 0.062767 |
Target: 5'- aCGCCGCCCCCGcccGGGCCacc-CCCCCu -3' miRNA: 3'- -GCGGCGGGGGC---CCCGGgaccGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 39817 | 0.74 | 0.062767 |
Target: 5'- gCGCCaGCCCCCguugggGGGGUgCgucggGGCCCCCa -3' miRNA: 3'- -GCGG-CGGGGG------CCCCGgGa----CCGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 120865 | 0.74 | 0.062767 |
Target: 5'- gGCgGCCCCUGGcGCcgCCUGGuCCCCCGg -3' miRNA: 3'- gCGgCGGGGGCCcCG--GGACC-GGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 106675 | 0.74 | 0.061273 |
Target: 5'- cCGCgGacgaaaacCCCCCGGGGgcucuuCCCgGGCCCCCGg -3' miRNA: 3'- -GCGgC--------GGGGGCCCC------GGGaCCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 23513 | 0.73 | 0.081697 |
Target: 5'- gCGCCgGCCCgCCGaGGGCCCcGaCCCCCu -3' miRNA: 3'- -GCGG-CGGG-GGC-CCCGGGaCcGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 150118 | 0.73 | 0.079771 |
Target: 5'- -cCCGUCCCCGGGGaccaaCCCgGcGCCCCCa -3' miRNA: 3'- gcGGCGGGGGCCCC-----GGGaC-CGGGGGc -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 72595 | 0.73 | 0.079014 |
Target: 5'- uCGCCGCCaccgaCCcGGGCCCgucgcgacgacagGGCCUCCGa -3' miRNA: 3'- -GCGGCGGg----GGcCCCGGGa------------CCGGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 2931 | 0.73 | 0.074253 |
Target: 5'- cCGCCGCCUCCGGGcGgCCgGGCCgggCCGg -3' miRNA: 3'- -GCGGCGGGGGCCC-CgGGaCCGGg--GGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 27858 | 0.73 | 0.074253 |
Target: 5'- gGCCGCCCCgCGGuGGgCCUGccuCCCCUGg -3' miRNA: 3'- gCGGCGGGG-GCC-CCgGGACc--GGGGGC- -5' |
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5561 | 3' | -72.7 | NC_001806.1 | + | 35774 | 0.73 | 0.083666 |
Target: 5'- aGCCGU--CCGGGGCUUUGGCgCCCGa -3' miRNA: 3'- gCGGCGggGGCCCCGGGACCGgGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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