miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 119252 0.66 0.234836
Target:  5'- aGCgCGUCCCCGcGuccgcagcccuuGGCCC-GGCCCCaCGc -3'
miRNA:   3'- gCG-GCGGGGGC-C------------CCGGGaCCGGGG-GC- -5'
5561 3' -72.7 NC_001806.1 + 65270 0.66 0.273398
Target:  5'- aGCCGCCaCCCaGGGUgaagCggggaggaggaggggGGCCCCCa -3'
miRNA:   3'- gCGGCGG-GGGcCCCGg---Ga--------------CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 73507 0.66 0.250543
Target:  5'- uGCUGCCCUggaaaacggccgUGGGGgacuUUCUGGCCUCCa -3'
miRNA:   3'- gCGGCGGGG------------GCCCC----GGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 4949 0.66 0.245213
Target:  5'- uGcCCGCCgCgGGGGCCCUcccGuCCCgCCGg -3'
miRNA:   3'- gC-GGCGGgGgCCCCGGGAc--C-GGG-GGC- -5'
5561 3' -72.7 NC_001806.1 + 70767 0.66 0.239977
Target:  5'- aGCUGCUgUCGGGaGaCCaGGUCCCCGg -3'
miRNA:   3'- gCGGCGGgGGCCC-CgGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 57361 0.66 0.245213
Target:  5'- gGCCGUCCuCCGGGgacacgGCCCggUGGCUgUCGu -3'
miRNA:   3'- gCGGCGGG-GGCCC------CGGG--ACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 44313 0.66 0.239977
Target:  5'- gCGCCGgCCUCGaGGGUCaCaGGaaCCCCCGu -3'
miRNA:   3'- -GCGGCgGGGGC-CCCGG-GaCC--GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 150869 0.66 0.239977
Target:  5'- gGCCGgCUCCGcGGGCCagGGCCCg-- -3'
miRNA:   3'- gCGGCgGGGGC-CCCGGgaCCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 58055 0.66 0.245213
Target:  5'- gGCuCGCUCCCaGaGGCCCgggaGGCCgagcuCCCGg -3'
miRNA:   3'- gCG-GCGGGGGcC-CCGGGa---CCGG-----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 146706 0.66 0.250006
Target:  5'- aGgCGCCCacuaGGGuGCCCUGGUcgaacagcauguuCCCCa -3'
miRNA:   3'- gCgGCGGGgg--CCC-CGGGACCG-------------GGGGc -5'
5561 3' -72.7 NC_001806.1 + 73206 0.66 0.239977
Target:  5'- uCGCCcgaGCCCCCGGGcgcagaccucGCCCagcuguucgaGGCCCaCCc -3'
miRNA:   3'- -GCGG---CGGGGGCCC----------CGGGa---------CCGGG-GGc -5'
5561 3' -72.7 NC_001806.1 + 79271 0.66 0.250006
Target:  5'- gGCggaggGCUCgUUGGGGCCCggaagccUGGCCCCCa -3'
miRNA:   3'- gCGg----CGGG-GGCCCCGGG-------ACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 24108 0.66 0.245213
Target:  5'- uGCUGUCCaCGcGGGaCCUGGCCUUCGc -3'
miRNA:   3'- gCGGCGGGgGC-CCCgGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 113066 0.66 0.234836
Target:  5'- aGCCGCCaauccguaCGGGGCgUacgUGGCggCCCCGg -3'
miRNA:   3'- gCGGCGGgg------GCCCCGgG---ACCG--GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 30038 0.66 0.245213
Target:  5'- gGCgGCCga-GGGGCCggacgGGCCCCCu -3'
miRNA:   3'- gCGgCGGgggCCCCGGga---CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 112131 0.66 0.250543
Target:  5'- gGCCGUCCUCGGGGCgUUugagcgcggcacGGCCgaCCa -3'
miRNA:   3'- gCGGCGGGGGCCCCGgGA------------CCGGg-GGc -5'
5561 3' -72.7 NC_001806.1 + 119604 0.66 0.245213
Target:  5'- aGCC-CCCCggCGGGGgCCgcuuugUGGCCCCa- -3'
miRNA:   3'- gCGGcGGGG--GCCCCgGG------ACCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 44425 0.66 0.238425
Target:  5'- aCGaCCGCCCCaacacauagcaggcCGcGGGCCC-GGCgUCCGc -3'
miRNA:   3'- -GC-GGCGGGG--------------GC-CCCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 151254 0.66 0.245742
Target:  5'- -cCCGCCCCCcGGGCCCacgccgggcggugggGGCCggggCCGg -3'
miRNA:   3'- gcGGCGGGGGcCCCGGGa--------------CCGGg---GGC- -5'
5561 3' -72.7 NC_001806.1 + 120096 0.66 0.244685
Target:  5'- gGCgUGCCUCC-GGGCCCUGGgCCaggccauCCGg -3'
miRNA:   3'- gCG-GCGGGGGcCCCGGGACCgGG-------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.