miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 295 0.69 0.146784
Target:  5'- -cCCGCUCCCGcGGCCCc-GCCCCCc -3'
miRNA:   3'- gcGGCGGGGGCcCCGGGacCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 374 0.7 0.121987
Target:  5'- gCGCgCGCCCgCggGGGGCCCgGGCUgCCa -3'
miRNA:   3'- -GCG-GCGGGgG--CCCCGGGaCCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 630 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 662 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 694 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 1419 0.67 0.215188
Target:  5'- gGCCGaggcccagcgaaUCCCgGGcGGCgCCggcggcagGGCCCCCGg -3'
miRNA:   3'- gCGGC------------GGGGgCC-CCG-GGa-------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 2277 0.69 0.168313
Target:  5'- cCGCCGCgCUCGGcGGaCCaCUccggcGGCCCCCc -3'
miRNA:   3'- -GCGGCGgGGGCC-CC-GG-GA-----CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 2405 0.69 0.148138
Target:  5'- gGCCGCCaugcggcgcagcgggCCCgaggcgcgcagGGGGCCaaagaggcGGCCCCCGg -3'
miRNA:   3'- gCGGCGG---------------GGG-----------CCCCGGga------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 2716 0.76 0.048108
Target:  5'- aGCCGCCCagGGGGUCggGGCCCUCGg -3'
miRNA:   3'- gCGGCGGGggCCCCGGgaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 2782 0.68 0.190062
Target:  5'- gCGCCGCggcggCCCGGGGCgCCgcgggcugGGCgggggcgggcucgggCCCCGg -3'
miRNA:   3'- -GCGGCGg----GGGCCCCG-GGa-------CCG---------------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 2931 0.73 0.074253
Target:  5'- cCGCCGCCUCCGGGcGgCCgGGCCgggCCGg -3'
miRNA:   3'- -GCGGCGGGGGCCC-CgGGaCCGGg--GGC- -5'
5561 3' -72.7 NC_001806.1 + 3007 0.67 0.231795
Target:  5'- gGCCGCCagcgcgucggcggcgUCCGGuGCgCUGGCCgCCGc -3'
miRNA:   3'- gCGGCGG---------------GGGCCcCGgGACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 3130 0.71 0.10354
Target:  5'- cCGCgGCagCgCGGGGCCCaGGgCCCCGg -3'
miRNA:   3'- -GCGgCGg-GgGCCCCGGGaCCgGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 3197 0.66 0.261489
Target:  5'- uCGCUGCCgCCGGccacGCgCaGGUCCCCGc -3'
miRNA:   3'- -GCGGCGGgGGCCc---CGgGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 3566 0.68 0.192626
Target:  5'- aGCCGCCCCaGGGcGgCgaGGaUCCCCGc -3'
miRNA:   3'- gCGGCGGGGgCCC-CgGgaCC-GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 3668 0.78 0.032571
Target:  5'- gCGCCGgCgCCGGGGCUCcccgcGGCCCCCGu -3'
miRNA:   3'- -GCGGCgGgGGCCCCGGGa----CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 3948 0.67 0.219963
Target:  5'- gCGCCacGUCCCCGGGGaCCacgcgcggguuCUGGagccaCCCCa -3'
miRNA:   3'- -GCGG--CGGGGGCCCC-GG-----------GACCg----GGGGc -5'
5561 3' -72.7 NC_001806.1 + 4048 0.7 0.121987
Target:  5'- gCGUCGCCCagcuCGGGcGCCCacacGGCCgCCGg -3'
miRNA:   3'- -GCGGCGGGg---GCCC-CGGGa---CCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 4175 0.69 0.157216
Target:  5'- -cCCGCCCCgGGGGCgggGGCCCggcgCCGg -3'
miRNA:   3'- gcGGCGGGGgCCCCGggaCCGGG----GGC- -5'
5561 3' -72.7 NC_001806.1 + 4334 0.66 0.272822
Target:  5'- cCGCCGCgcgggCCCGGcGGCgCUcgaugcGGCCCgCGg -3'
miRNA:   3'- -GCGGCGg----GGGCC-CCGgGA------CCGGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.