miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 152005 0.69 0.146784
Target:  5'- -cCCGCUCCCGcGGCCCc-GCCCCCc -3'
miRNA:   3'- gcGGCGGGGGCcCCGGGacCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 151254 0.66 0.245742
Target:  5'- -cCCGCCCCCcGGGCCCacgccgggcggugggGGCCggggCCGg -3'
miRNA:   3'- gcGGCGGGGGcCCCGGGa--------------CCGGg---GGC- -5'
5561 3' -72.7 NC_001806.1 + 150869 0.66 0.239977
Target:  5'- gGCCGgCUCCGcGGGCCagGGCCCg-- -3'
miRNA:   3'- gCGGCgGGGGC-CCCGGgaCCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 150170 0.68 0.179701
Target:  5'- gGCCcgGCCCCCgauuugGGGGCCCaacccggUGuCCCCCa -3'
miRNA:   3'- gCGG--CGGGGG------CCCCGGG-------ACcGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 150118 0.73 0.079771
Target:  5'- -cCCGUCCCCGGGGaccaaCCCgGcGCCCCCa -3'
miRNA:   3'- gcGGCGGGGGCCCC-----GGGaC-CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 149640 0.66 0.250543
Target:  5'- uGgCGCCCCaacauGGcGCCC-GGCUCCCGu -3'
miRNA:   3'- gCgGCGGGGg----CCcCGGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 147677 0.73 0.085681
Target:  5'- -uCCGCCCCgGGGGCCggGGCgcgggggcgggCCCCGg -3'
miRNA:   3'- gcGGCGGGGgCCCCGGgaCCG-----------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 147325 0.66 0.271671
Target:  5'- gCGCC-CCCCCggcccugagucggagGGGGggugcgucgccgcccUCUUGGCCCCUGc -3'
miRNA:   3'- -GCGGcGGGGG---------------CCCC---------------GGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 147039 0.72 0.101129
Target:  5'- gGCCGCCCgCGGGGac--GGCCCCgGa -3'
miRNA:   3'- gCGGCGGGgGCCCCgggaCCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 146706 0.66 0.250006
Target:  5'- aGgCGCCCacuaGGGuGCCCUGGUcgaacagcauguuCCCCa -3'
miRNA:   3'- gCgGCGGGgg--CCC-CGGGACCG-------------GGGGc -5'
5561 3' -72.7 NC_001806.1 + 144968 0.74 0.067463
Target:  5'- gGCgGCCcggCCCGGGGCCCcGGCggacccaaggggCCCCGg -3'
miRNA:   3'- gCGgCGG---GGGCCCCGGGaCCG------------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 144576 0.66 0.272822
Target:  5'- gGgCGCgUCCGGGuGCCgCggcucuccgGGCCCCCc -3'
miRNA:   3'- gCgGCGgGGGCCC-CGG-Ga--------CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 143955 0.67 0.22483
Target:  5'- cCGCCcacGCCCCCGccccuGCCCcGGCgacCCCCGg -3'
miRNA:   3'- -GCGG---CGGGGGCcc---CGGGaCCG---GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 143679 0.71 0.106005
Target:  5'- -cCCGCCCCCGGGaCCCcacauauaaGCCCCCa -3'
miRNA:   3'- gcGGCGGGGGCCCcGGGac-------CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 143569 0.7 0.12457
Target:  5'- cCGCCGCCCacccacccaccUCGGGauacccaGCCCcGGuCCCCCGu -3'
miRNA:   3'- -GCGGCGGG-----------GGCCC-------CGGGaCC-GGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 143528 0.66 0.250543
Target:  5'- -cCCGCCcaCCCGGcccGGCCC-GGCCcggCCCGg -3'
miRNA:   3'- gcGGCGG--GGGCC---CCGGGaCCGG---GGGC- -5'
5561 3' -72.7 NC_001806.1 + 137662 0.66 0.255968
Target:  5'- gGgCGCCCUgacgCGGuuGGCCCcGGCCaCCCa -3'
miRNA:   3'- gCgGCGGGG----GCC--CCGGGaCCGG-GGGc -5'
5561 3' -72.7 NC_001806.1 + 137584 0.7 0.126026
Target:  5'- gGCCGCCUCCGggggcgaggaguugcGGaacgaguuucgcGCCCUGGCCgCCCu -3'
miRNA:   3'- gCGGCGGGGGC---------------CC------------CGGGACCGG-GGGc -5'
5561 3' -72.7 NC_001806.1 + 136917 0.67 0.210037
Target:  5'- aGCCGUCCUCGGGGgagcacagcgcuuCCgUGuCCCCCc -3'
miRNA:   3'- gCGGCGGGGGCCCC-------------GGgACcGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 136348 0.66 0.258717
Target:  5'- gCGCCaGCUcaaaaaaCCCGGGGCCggcgcgcuccgcGGCCUCCGc -3'
miRNA:   3'- -GCGG-CGG-------GGGCCCCGGga----------CCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.