miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 132501 1.07 0.000183
Target:  5'- aCGCCGCCCCCGGGGCCCUGGCCCCCGu -3'
miRNA:   3'- -GCGGCGGGGGCCCCGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 30253 0.94 0.001757
Target:  5'- gCGCCGCCUCCGGGGCCC-GGCCCCCGc -3'
miRNA:   3'- -GCGGCGGGGGCCCCGGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 70502 0.85 0.008604
Target:  5'- aCGcCCGaCCgCCUGGGGCCCUGGCCCCCc -3'
miRNA:   3'- -GC-GGC-GG-GGGCCCCGGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 26670 0.83 0.013103
Target:  5'- cCGCCGCCCCCc-GGCCCcGGCCCCCa -3'
miRNA:   3'- -GCGGCGGGGGccCCGGGaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 23412 0.83 0.014464
Target:  5'- gCGCCccccuccacGCCCCCGGGGCCCgagcccGCCCCCGc -3'
miRNA:   3'- -GCGG---------CGGGGGCCCCGGGac----CGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 57038 0.81 0.019447
Target:  5'- gGCCGggCCCGGGGCCggGGCCCCCGg -3'
miRNA:   3'- gCGGCggGGGCCCCGGgaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 45384 0.8 0.02146
Target:  5'- uGuCUGCCCCgGGGGCCCUGGUgCCCu -3'
miRNA:   3'- gC-GGCGGGGgCCCCGGGACCGgGGGc -5'
5561 3' -72.7 NC_001806.1 + 23097 0.8 0.021994
Target:  5'- aGCCugGUCgCCGGGGCCCUGGgCCCCGc -3'
miRNA:   3'- gCGG--CGGgGGCCCCGGGACCgGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132675 0.8 0.021994
Target:  5'- aCGCCGCgCuCCUGGGGgCCUGGCCCgCGg -3'
miRNA:   3'- -GCGGCG-G-GGGCCCCgGGACCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 26407 0.8 0.024268
Target:  5'- cCGCCGCCCCCGGccGCCCgGGCCCaCGg -3'
miRNA:   3'- -GCGGCGGGGGCCc-CGGGaCCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 30215 0.78 0.030265
Target:  5'- cCGCgCGCCCCCGcGcGGCCgUGGCCCCg- -3'
miRNA:   3'- -GCG-GCGGGGGC-C-CCGGgACCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 67488 0.78 0.031015
Target:  5'- gGCCGCCCuCCGGGGUCCcGaCCCCCu -3'
miRNA:   3'- gCGGCGGG-GGCCCCGGGaCcGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 3668 0.78 0.032571
Target:  5'- gCGCCGgCgCCGGGGCUCcccgcGGCCCCCGu -3'
miRNA:   3'- -GCGGCgGgGGCCCCGGGa----CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 27053 0.77 0.036805
Target:  5'- gGCCGUgCCUGGGGCCCgaGGCCcgugCCCGg -3'
miRNA:   3'- gCGGCGgGGGCCCCGGGa-CCGG----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 43775 0.77 0.038646
Target:  5'- aCGCCGCCCCCGGaGGUUacgCUGGCgCCUGc -3'
miRNA:   3'- -GCGGCGGGGGCC-CCGG---GACCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 72134 0.77 0.038646
Target:  5'- uCGCCGgC-CCGuGGGCCCUGcGCCCCCu -3'
miRNA:   3'- -GCGGCgGgGGC-CCCGGGAC-CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 4388 0.76 0.044727
Target:  5'- uCGCCGCCgCCCGGGGCUUgggcgcGGCCUCgGa -3'
miRNA:   3'- -GCGGCGG-GGGCCCCGGGa-----CCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 22875 0.76 0.046954
Target:  5'- gGCCGUCCcggggcuggCCGGGGCCC-GGCCCgCCa -3'
miRNA:   3'- gCGGCGGG---------GGCCCCGGGaCCGGG-GGc -5'
5561 3' -72.7 NC_001806.1 + 30278 0.76 0.046954
Target:  5'- gCGCCccgGCCCCCGGGGCggagCC-GGCCgCCCGc -3'
miRNA:   3'- -GCGG---CGGGGGCCCCG----GGaCCGG-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 2716 0.76 0.048108
Target:  5'- aGCCGCCCagGGGGUCggGGCCCUCGg -3'
miRNA:   3'- gCGGCGGGggCCCCGGgaCCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.