miRNA display CGI


Results 21 - 40 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 135787 0.74 0.07078
Target:  5'- gCGcCCGCCCCCccuGGUCCUGGCCCgCa -3'
miRNA:   3'- -GC-GGCGGGGGcc-CCGGGACCGGGgGc -5'
5561 3' -72.7 NC_001806.1 + 135593 0.67 0.201391
Target:  5'- cCGCgCGCUgCUGGcGCUCcagGGCCCCCGc -3'
miRNA:   3'- -GCG-GCGGgGGCCcCGGGa--CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 134984 0.7 0.140185
Target:  5'- gGCgGCCauCCCGGuGCCCgauGCCCCCGc -3'
miRNA:   3'- gCGgCGG--GGGCCcCGGGac-CGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 133277 0.67 0.205903
Target:  5'- aCGCCGUCCggCUGcGGCacccacugugCCUGGCCCUCGa -3'
miRNA:   3'- -GCGGCGGG--GGCcCCG----------GGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132990 0.7 0.126026
Target:  5'- gGCCGCUCCCucagagcccugggccGGGGCcgucuuggagcgCCUGGUCCCgGa -3'
miRNA:   3'- gCGGCGGGGG---------------CCCCG------------GGACCGGGGgC- -5'
5561 3' -72.7 NC_001806.1 + 132893 0.75 0.058387
Target:  5'- gCGCCcaGCUCCUGGcGGCCCUGGCcgaCCUCGg -3'
miRNA:   3'- -GCGG--CGGGGGCC-CCGGGACCG---GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 132675 0.8 0.021994
Target:  5'- aCGCCGCgCuCCUGGGGgCCUGGCCCgCGg -3'
miRNA:   3'- -GCGGCG-G-GGGCCCCgGGACCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 132501 1.07 0.000183
Target:  5'- aCGCCGCCCCCGGGGCCCUGGCCCCCGu -3'
miRNA:   3'- -GCGGCGGGGGCCCCGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 131482 0.71 0.111101
Target:  5'- uGCCGgaacgcaCCgaGGGGCCaaguUGGCCCCCGg -3'
miRNA:   3'- gCGGCg------GGggCCCCGGg---ACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 128039 0.67 0.210501
Target:  5'- gGCCgacgauGCCCgUGGcGGCCaC-GGCCCCCa -3'
miRNA:   3'- gCGG------CGGGgGCC-CCGG-GaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 127270 0.68 0.18837
Target:  5'- gGCgGaCCCCCGGaGGCgCCUG-CCCCg- -3'
miRNA:   3'- gCGgC-GGGGGCC-CCG-GGACcGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 127047 0.68 0.184197
Target:  5'- gGCCucucguUCUCCGGGGCCC-GGCCCUg- -3'
miRNA:   3'- gCGGc-----GGGGGCCCCGGGaCCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 125842 0.71 0.113734
Target:  5'- gCGCCgcggGCCCCCGGccgccgcggacGCCgUGGCgCCCCGg -3'
miRNA:   3'- -GCGG----CGGGGGCCc----------CGGgACCG-GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 125299 0.66 0.250543
Target:  5'- aG-CGUCCCUGG-GCCCUGGCCgaggacacCCCu -3'
miRNA:   3'- gCgGCGGGGGCCcCGGGACCGG--------GGGc -5'
5561 3' -72.7 NC_001806.1 + 124890 0.69 0.150189
Target:  5'- aGCUGUCgCCGGacuucGCCCUGGCCCUg- -3'
miRNA:   3'- gCGGCGGgGGCCc----CGGGACCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 123754 0.69 0.153666
Target:  5'- aCGggGCCUCCGGGcGCCCcagcGGCCCCUc -3'
miRNA:   3'- -GCggCGGGGGCCC-CGGGa---CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 123235 0.69 0.153666
Target:  5'- uGCCGCCCaCGcGGCCCUGcGCCgacgCCUGg -3'
miRNA:   3'- gCGGCGGGgGCcCCGGGAC-CGG----GGGC- -5'
5561 3' -72.7 NC_001806.1 + 121910 0.66 0.250543
Target:  5'- aGuuGCCccaccguugCCCGGGccguuGCCCgGGCCUCCu -3'
miRNA:   3'- gCggCGG---------GGGCCC-----CGGGaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 121657 0.66 0.250543
Target:  5'- gCGUCGCCCCgugucUGuGGGCCaagaUGGCCCa-- -3'
miRNA:   3'- -GCGGCGGGG-----GC-CCCGGg---ACCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 121423 0.67 0.215188
Target:  5'- gCGCCuugGgCCCgGGGGCCUggUGGCaccuCCCCa -3'
miRNA:   3'- -GCGG---CgGGGgCCCCGGG--ACCG----GGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.