miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 116917 0.66 0.259269
Target:  5'- uCGUCGCCuggcugaCCCacgcgggccaacuaGGagacaccuuGGCCCUGGCUCCCGu -3'
miRNA:   3'- -GCGGCGG-------GGG--------------CC---------CCGGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 136348 0.66 0.258717
Target:  5'- gCGCCaGCUcaaaaaaCCCGGGGCCggcgcgcuccgcGGCCUCCGc -3'
miRNA:   3'- -GCGG-CGG-------GGGCCCCGGga----------CCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 88969 0.66 0.255968
Target:  5'- aCGCCGCCCCacaGGcgcgagcgccgcGGCCagaaGCCgCCCGa -3'
miRNA:   3'- -GCGGCGGGGg--CC------------CCGGgac-CGG-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 137662 0.66 0.255968
Target:  5'- gGgCGCCCUgacgCGGuuGGCCCcGGCCaCCCa -3'
miRNA:   3'- gCgGCGGGG----GCC--CCGGGaCCGG-GGGc -5'
5561 3' -72.7 NC_001806.1 + 19903 0.66 0.255968
Target:  5'- uCGUCggagGCCCCCGGGGUgCgu-CCCCUGu -3'
miRNA:   3'- -GCGG----CGGGGGCCCCGgGaccGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 37597 0.66 0.255968
Target:  5'- gGcCCGCCagcaCCGGGGCCCaggGGCUauUCgCGg -3'
miRNA:   3'- gC-GGCGGg---GGCCCCGGGa--CCGG--GG-GC- -5'
5561 3' -72.7 NC_001806.1 + 28601 0.66 0.255968
Target:  5'- gGUCGCCgUguUGGGGgCgUGGUCCCCa -3'
miRNA:   3'- gCGGCGGgG--GCCCCgGgACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 76816 0.66 0.255968
Target:  5'- gCGCgGCCagCGGcgacGGCCCgGGCCUCCu -3'
miRNA:   3'- -GCGgCGGggGCC----CCGGGaCCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 75273 0.66 0.255968
Target:  5'- gGCCGCCagcgaCCCGGccucccCCCUGGCCUUCc -3'
miRNA:   3'- gCGGCGG-----GGGCCcc----GGGACCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 73041 0.66 0.255968
Target:  5'- gGCaaaaCCCCCgucGGGGCCgC-GGUCCCCGc -3'
miRNA:   3'- gCGgc--GGGGG---CCCCGG-GaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 11357 0.66 0.25433
Target:  5'- aGCCGCCCCaGcGGGCUCcgacucuucggcgaUGGCCgUCa -3'
miRNA:   3'- gCGGCGGGGgC-CCCGGG--------------ACCGGgGGc -5'
5561 3' -72.7 NC_001806.1 + 143528 0.66 0.250543
Target:  5'- -cCCGCCcaCCCGGcccGGCCC-GGCCcggCCCGg -3'
miRNA:   3'- gcGGCGG--GGGCC---CCGGGaCCGG---GGGC- -5'
5561 3' -72.7 NC_001806.1 + 112131 0.66 0.250543
Target:  5'- gGCCGUCCUCGGGGCgUUugagcgcggcacGGCCgaCCa -3'
miRNA:   3'- gCGGCGGGGGCCCCGgGA------------CCGGg-GGc -5'
5561 3' -72.7 NC_001806.1 + 121657 0.66 0.250543
Target:  5'- gCGUCGCCCCgugucUGuGGGCCaagaUGGCCCa-- -3'
miRNA:   3'- -GCGGCGGGG-----GC-CCCGGg---ACCGGGggc -5'
5561 3' -72.7 NC_001806.1 + 30458 0.66 0.250543
Target:  5'- gCGCCGCCCCCuccGGCgCCgccccGCUCCCc -3'
miRNA:   3'- -GCGGCGGGGGcc-CCG-GGac---CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 149640 0.66 0.250543
Target:  5'- uGgCGCCCCaacauGGcGCCC-GGCUCCCGu -3'
miRNA:   3'- gCgGCGGGGg----CCcCGGGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 20364 0.66 0.250543
Target:  5'- gGCCGCCCgCCGucccguuGGUCCcGGCgUCCGg -3'
miRNA:   3'- gCGGCGGG-GGCc------CCGGGaCCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 43358 0.66 0.250543
Target:  5'- aCGCuCGaugacgCCCUGGGGuCCCUGGacgaCaCCCGa -3'
miRNA:   3'- -GCG-GCg-----GGGGCCCC-GGGACCg---G-GGGC- -5'
5561 3' -72.7 NC_001806.1 + 125299 0.66 0.250543
Target:  5'- aG-CGUCCCUGG-GCCCUGGCCgaggacacCCCu -3'
miRNA:   3'- gCgGCGGGGGCCcCGGGACCGG--------GGGc -5'
5561 3' -72.7 NC_001806.1 + 121910 0.66 0.250543
Target:  5'- aGuuGCCccaccguugCCCGGGccguuGCCCgGGCCUCCu -3'
miRNA:   3'- gCggCGG---------GGGCCC-----CGGGaCCGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.