miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 23313 0.77 0.105155
Target:  5'- gCCcGGCCGccCGgaGGCGGCgGCCCGCg -3'
miRNA:   3'- aGGuCCGGCa-GCa-CCGCCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 23467 0.8 0.063941
Target:  5'- cCCGGGCCGcCGcGGCgcaGGcCCGCCCGCg -3'
miRNA:   3'- aGGUCCGGCaGCaCCG---CC-GGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 23746 0.71 0.275582
Target:  5'- cCCAGGCCG-CGUgcGGCGGCgGCgaCGa -3'
miRNA:   3'- aGGUCCGGCaGCA--CCGCCGgCGg-GCg -5'
5563 5' -65.4 NC_001806.1 + 23794 0.66 0.478058
Target:  5'- aCgGGGCCGcCG-GG-GGCCGCCUc- -3'
miRNA:   3'- aGgUCCGGCaGCaCCgCCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 23932 0.68 0.402275
Target:  5'- aCCuGGCCGgcggCGgggccuggGGgGGCCGCCgGa -3'
miRNA:   3'- aGGuCCGGCa---GCa-------CCgCCGGCGGgCg -5'
5563 5' -65.4 NC_001806.1 + 24135 0.67 0.426698
Target:  5'- cCgGGGCCGUgGaguuucUGG-GGCUGCUCGCc -3'
miRNA:   3'- aGgUCCGGCAgC------ACCgCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 24510 0.71 0.254425
Target:  5'- gCCGGGCCGUgcugccggcgcuggaCGgccgGGCGGCgGCCuCGg -3'
miRNA:   3'- aGGUCCGGCA---------------GCa---CCGCCGgCGG-GCg -5'
5563 5' -65.4 NC_001806.1 + 25869 0.67 0.435032
Target:  5'- cCCGGGCCccccgCG-GGCGcGCgCGCgCGCa -3'
miRNA:   3'- aGGUCCGGca---GCaCCGC-CG-GCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 26927 0.72 0.210244
Target:  5'- gUCCGGGUgcgccaccuggUGUC-UGGgccuCGGCCGCCCGCc -3'
miRNA:   3'- -AGGUCCG-----------GCAGcACC----GCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 27016 0.66 0.495849
Target:  5'- uUCCGGcGCCGg-GUGGCGGagGCCgagGCg -3'
miRNA:   3'- -AGGUC-CGGCagCACCGCCggCGGg--CG- -5'
5563 5' -65.4 NC_001806.1 + 27049 0.68 0.371126
Target:  5'- aUCGGGCCGUgCcUGG-GGCCcgagGCCCGUg -3'
miRNA:   3'- aGGUCCGGCA-GcACCgCCGG----CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 27249 0.67 0.448561
Target:  5'- -gCGGGCCGccucgggggCGggacuggccaaucGGCGGCCGCCagCGCg -3'
miRNA:   3'- agGUCCGGCa--------GCa------------CCGCCGGCGG--GCG- -5'
5563 5' -65.4 NC_001806.1 + 27835 0.66 0.495849
Target:  5'- gCCGGGuuGgucccCGgGGacggGGCCGCcCCGCg -3'
miRNA:   3'- aGGUCCggCa----GCaCCg---CCGGCG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 30181 0.69 0.3636
Target:  5'- cCCGGGCCccccgCGUccGCGGCCGCgucgggacCCGCg -3'
miRNA:   3'- aGGUCCGGca---GCAc-CGCCGGCG--------GGCG- -5'
5563 5' -65.4 NC_001806.1 + 30281 0.7 0.300714
Target:  5'- cCCcGGCCccCGgGGCggagccGGCCGCCCGCc -3'
miRNA:   3'- aGGuCCGGcaGCaCCG------CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 30386 0.66 0.513934
Target:  5'- gCCGGGCgCGUgcgacgGUGGCGcGCgGCUCGg -3'
miRNA:   3'- aGGUCCG-GCAg-----CACCGC-CGgCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 30912 0.72 0.230398
Target:  5'- uUCCgGGGCCGUCcccgcgGGCGGCCuaCgCGCu -3'
miRNA:   3'- -AGG-UCCGGCAGca----CCGCCGGcgG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 32942 0.74 0.162518
Target:  5'- gCCGGGCCGUUGUGG-GGCCccggGCCgGg -3'
miRNA:   3'- aGGUCCGGCAGCACCgCCGG----CGGgCg -5'
5563 5' -65.4 NC_001806.1 + 32997 0.71 0.246564
Target:  5'- gCCGGGCCGcCacGGgGGCCGgCCGUu -3'
miRNA:   3'- aGGUCCGGCaGcaCCgCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 33158 0.69 0.348869
Target:  5'- cCCGGGCCGUac--GCGGCCuucgcCCCGUg -3'
miRNA:   3'- aGGUCCGGCAgcacCGCCGGc----GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.