miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 5588 0.67 0.426698
Target:  5'- gCCGGcacGCCGggggccCGUGGCcGCgGCCCGUu -3'
miRNA:   3'- aGGUC---CGGCa-----GCACCGcCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 5833 0.67 0.435032
Target:  5'- cCCGuuGGCCGUCcccgGGCcccccGGucCCGCCCGCc -3'
miRNA:   3'- aGGU--CCGGCAGca--CCG-----CC--GGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 5875 0.68 0.386494
Target:  5'- gCCGGGaccaaCGggaCGgcgGGCggcccaagGGCCGCCCGCc -3'
miRNA:   3'- aGGUCCg----GCa--GCa--CCG--------CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 5928 0.67 0.426698
Target:  5'- cCCAuuGGCCGgCG-GGCGGgaCCGCCC-Ca -3'
miRNA:   3'- aGGU--CCGGCaGCaCCGCC--GGCGGGcG- -5'
5563 5' -65.4 NC_001806.1 + 15701 0.74 0.178629
Target:  5'- gUCCAGGCCgGUCGgguguacGGCGGgcgauuguucCCGgCCGCg -3'
miRNA:   3'- -AGGUCCGG-CAGCa------CCGCC----------GGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 20007 0.67 0.460587
Target:  5'- gCCGGGgCGUCGcgauGCcgacGCCGUCCGCu -3'
miRNA:   3'- aGGUCCgGCAGCac--CGc---CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 20088 0.66 0.504856
Target:  5'- cUCCc-GUCGuUCGUGGCcggcGCCGUCUGCg -3'
miRNA:   3'- -AGGucCGGC-AGCACCGc---CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 20464 0.67 0.469281
Target:  5'- aCCGGGaaGUCGgGGCccgGGCCccgcccccuGCCCGUu -3'
miRNA:   3'- aGGUCCggCAGCaCCG---CCGG---------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 21145 0.67 0.451979
Target:  5'- cCCGGGCCccacCGacgGGCcGCCGCCCa- -3'
miRNA:   3'- aGGUCCGGca--GCa--CCGcCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 21763 0.72 0.241073
Target:  5'- -gCGGGCCGUCG-GGCGGgguCCGUCgaGCg -3'
miRNA:   3'- agGUCCGGCAGCaCCGCC---GGCGGg-CG- -5'
5563 5' -65.4 NC_001806.1 + 21915 0.75 0.13745
Target:  5'- gCCGGGCCcgcgCGgcGGUGGCCGgCCGCg -3'
miRNA:   3'- aGGUCCGGca--GCa-CCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22119 0.7 0.3207
Target:  5'- cCCGGGCC-UC-UGGgGGgCGCCCGa -3'
miRNA:   3'- aGGUCCGGcAGcACCgCCgGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 22165 0.66 0.504856
Target:  5'- uUCgAGGCC-UCGggcgccccGGCGGCCgugugggcGCCCGa -3'
miRNA:   3'- -AGgUCCGGcAGCa-------CCGCCGG--------CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 22322 0.66 0.478058
Target:  5'- aCCAGGCCuGcuuccggaucUCG-GGC-GCCGCgCGCa -3'
miRNA:   3'- aGGUCCGG-C----------AGCaCCGcCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 22389 0.75 0.152759
Target:  5'- -gCGGGCCGUgccccaccugggcuaCGccaUGGCGGCCGgCCGCu -3'
miRNA:   3'- agGUCCGGCA---------------GC---ACCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22678 0.71 0.246564
Target:  5'- aUCCucGCCGcCcuggGGCGGCUGUCCGCc -3'
miRNA:   3'- -AGGucCGGCaGca--CCGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22787 0.85 0.027644
Target:  5'- cCCAGGCCGgccgCGUGGCcgucgagugccuGGCCGCCUGCc -3'
miRNA:   3'- aGGUCCGGCa---GCACCG------------CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22868 0.69 0.334568
Target:  5'- aCCuggcGGCCGUCccggGGCuGGCCggggcccgGCCCGCc -3'
miRNA:   3'- aGGu---CCGGCAGca--CCG-CCGG--------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 23065 0.76 0.115978
Target:  5'- gCgAGGCCGcCGUGGCcGCCGUgCGCg -3'
miRNA:   3'- aGgUCCGGCaGCACCGcCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 23231 0.72 0.235685
Target:  5'- aCCGGacGCCGcCGacgcgcUGGCGGCCGCCgcCGCc -3'
miRNA:   3'- aGGUC--CGGCaGC------ACCGCCGGCGG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.