Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5563 | 5' | -65.4 | NC_001806.1 | + | 1903 | 0.66 | 0.513934 |
Target: 5'- cCCGGGCCGaacaCGcGGCccgaGGCCaGCaCCGUg -3' miRNA: 3'- aGGUCCGGCa---GCaCCG----CCGG-CG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 75649 | 0.66 | 0.499443 |
Target: 5'- cUUgAGGCCGccaccgcCGaccucagagagaagaUGGCGGCCcagcgcGCCCGCa -3' miRNA: 3'- -AGgUCCGGCa------GC---------------ACCGCCGG------CGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 43115 | 0.66 | 0.486915 |
Target: 5'- cUCCAcGGgaGUCc---CGGCCGCCCGCc -3' miRNA: 3'- -AGGU-CCggCAGcaccGCCGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 146078 | 0.66 | 0.504856 |
Target: 5'- gCCAGGUCaGUcCG-GGCGGgcaggCGCUCGCg -3' miRNA: 3'- aGGUCCGG-CA-GCaCCGCCg----GCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 67522 | 0.66 | 0.478058 |
Target: 5'- cCUGGGCCGUCGcGGCgagagaucgggGGgCGCaggaCGCg -3' miRNA: 3'- aGGUCCGGCAGCaCCG-----------CCgGCGg---GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 42363 | 0.66 | 0.478058 |
Target: 5'- gUCCuugauGGCCugcagGUCGUacGUGGCC-CCCGCg -3' miRNA: 3'- -AGGu----CCGG-----CAGCAc-CGCCGGcGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 151320 | 0.66 | 0.523077 |
Target: 5'- cUCUGGcGCCGgcUCGggcgGGgGGCUGUCCGg -3' miRNA: 3'- -AGGUC-CGGC--AGCa---CCgCCGGCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 83164 | 0.66 | 0.495849 |
Target: 5'- cUCCugacGGCCaGUcaCGUgauaGGUGuGCCGCCCGUc -3' miRNA: 3'- -AGGu---CCGG-CA--GCA----CCGC-CGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 136534 | 0.66 | 0.495849 |
Target: 5'- -aCGGGCCGcUCG----GGCCGCCCGg -3' miRNA: 3'- agGUCCGGC-AGCaccgCCGGCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 73558 | 0.66 | 0.495849 |
Target: 5'- gCCuGGCCGaCGUGGCcGCCcaucuGCCCc- -3' miRNA: 3'- aGGuCCGGCaGCACCGcCGG-----CGGGcg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 50710 | 0.66 | 0.504856 |
Target: 5'- gCCGGGCuCGUCcUGcaGCGGCUGCUgGg -3' miRNA: 3'- aGGUCCG-GCAGcAC--CGCCGGCGGgCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 135560 | 0.66 | 0.520327 |
Target: 5'- aUCCAccggucacggacucGGCCG-CcaGGuCGGCCGCgCGCu -3' miRNA: 3'- -AGGU--------------CCGGCaGcaCC-GCCGGCGgGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 111521 | 0.66 | 0.476296 |
Target: 5'- aCCuuGGGCCGUCGggcacguacacgGGUGGCCGggCGUu -3' miRNA: 3'- aGG--UCCGGCAGCa-----------CCGCCGGCggGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 22165 | 0.66 | 0.504856 |
Target: 5'- uUCgAGGCC-UCGggcgccccGGCGGCCgugugggcGCCCGa -3' miRNA: 3'- -AGgUCCGGcAGCa-------CCGCCGG--------CGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 23794 | 0.66 | 0.478058 |
Target: 5'- aCgGGGCCGcCG-GG-GGCCGCCUc- -3' miRNA: 3'- aGgUCCGGCaGCaCCgCCGGCGGGcg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 81950 | 0.66 | 0.504856 |
Target: 5'- cCCGGGaCCGcCGgguucGGCGGCgacggguaauaGCCUGCu -3' miRNA: 3'- aGGUCC-GGCaGCa----CCGCCGg----------CGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 20088 | 0.66 | 0.504856 |
Target: 5'- cUCCc-GUCGuUCGUGGCcggcGCCGUCUGCg -3' miRNA: 3'- -AGGucCGGC-AGCACCGc---CGGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 135972 | 0.66 | 0.513934 |
Target: 5'- aCgAGGCg--CGaGGCGGCCGaCCCGg -3' miRNA: 3'- aGgUCCGgcaGCaCCGCCGGC-GGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 123199 | 0.66 | 0.511203 |
Target: 5'- cCCGGGUCGcCcgcaggGUGGCGgaauggaccgagauGCCGCCCacGCg -3' miRNA: 3'- aGGUCCGGCaG------CACCGC--------------CGGCGGG--CG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 57581 | 0.66 | 0.476296 |
Target: 5'- cCCGGGauggugcgagaGUUG-GGCGGCCGCCaagGCc -3' miRNA: 3'- aGGUCCgg---------CAGCaCCGCCGGCGGg--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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