miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 113080 0.74 0.166419
Target:  5'- -aCGGGgCGUaCGUGGCGGCCccgGCCgGCc -3'
miRNA:   3'- agGUCCgGCA-GCACCGCCGG---CGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 134974 0.74 0.170403
Target:  5'- ---cGGCCGUCGcGGCGGCCaucccgguGCCCGa -3'
miRNA:   3'- agguCCGGCAGCaCCGCCGG--------CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 150668 0.74 0.174473
Target:  5'- gCCGGGCCccgccgCGcUGGCGGCCGCCg-- -3'
miRNA:   3'- aGGUCCGGca----GC-ACCGCCGGCGGgcg -5'
5563 5' -65.4 NC_001806.1 + 15701 0.74 0.178629
Target:  5'- gUCCAGGCCgGUCGgguguacGGCGGgcgauuguucCCGgCCGCg -3'
miRNA:   3'- -AGGUCCGG-CAGCa------CCGCC----------GGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 5078 0.73 0.182872
Target:  5'- gUCUGGGCuCGggGUgGGCGGCgGCCCGUc -3'
miRNA:   3'- -AGGUCCG-GCagCA-CCGCCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 55491 0.73 0.196141
Target:  5'- aCCGGGCCaauggGUCGcGGCGGUCGCaCCa- -3'
miRNA:   3'- aGGUCCGG-----CAGCaCCGCCGGCG-GGcg -5'
5563 5' -65.4 NC_001806.1 + 54089 0.73 0.196141
Target:  5'- cCCAGGCCG-CGgcGGgGaGCCgaGCCCGCa -3'
miRNA:   3'- aGGUCCGGCaGCa-CCgC-CGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 41680 0.73 0.196141
Target:  5'- -gCAGGuCUGUgGgggcGGCGuGCCGCCCGCc -3'
miRNA:   3'- agGUCC-GGCAgCa---CCGC-CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 106704 0.73 0.205448
Target:  5'- cCCGGGCCccCG-GGCGGCC-CCCGg -3'
miRNA:   3'- aGGUCCGGcaGCaCCGCCGGcGGGCg -5'
5563 5' -65.4 NC_001806.1 + 26927 0.72 0.210244
Target:  5'- gUCCGGGUgcgccaccuggUGUC-UGGgccuCGGCCGCCCGCc -3'
miRNA:   3'- -AGGUCCG-----------GCAGcACC----GCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 1462 0.72 0.210244
Target:  5'- cCCGGGCCGUCGUcGUcGCCGCgCaGCa -3'
miRNA:   3'- aGGUCCGGCAGCAcCGcCGGCGgG-CG- -5'
5563 5' -65.4 NC_001806.1 + 120327 0.72 0.220124
Target:  5'- aCgGGGCgGUCGggGGCGGCggguCGuCCCGCu -3'
miRNA:   3'- aGgUCCGgCAGCa-CCGCCG----GC-GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 30912 0.72 0.230398
Target:  5'- uUCCgGGGCCGUCcccgcgGGCGGCCuaCgCGCu -3'
miRNA:   3'- -AGG-UCCGGCAGca----CCGCCGGcgG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 4742 0.72 0.235685
Target:  5'- cCCGGGCCGg---GGCccGGUCGCCgGCg -3'
miRNA:   3'- aGGUCCGGCagcaCCG--CCGGCGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 23231 0.72 0.235685
Target:  5'- aCCGGacGCCGcCGacgcgcUGGCGGCCGCCgcCGCc -3'
miRNA:   3'- aGGUC--CGGCaGC------ACCGCCGGCGG--GCG- -5'
5563 5' -65.4 NC_001806.1 + 21763 0.72 0.241073
Target:  5'- -gCGGGCCGUCG-GGCGGgguCCGUCgaGCg -3'
miRNA:   3'- agGUCCGGCAGCaCCGCC---GGCGGg-CG- -5'
5563 5' -65.4 NC_001806.1 + 3818 0.71 0.246564
Target:  5'- gCCAGGCCccaGcCGaaGCGGCCGgCCGCc -3'
miRNA:   3'- aGGUCCGG---CaGCacCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 32997 0.71 0.246564
Target:  5'- gCCGGGCCGcCacGGgGGCCGgCCGUu -3'
miRNA:   3'- aGGUCCGGCaGcaCCgCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22678 0.71 0.246564
Target:  5'- aUCCucGCCGcCcuggGGCGGCUGUCCGCc -3'
miRNA:   3'- -AGGucCGGCaGca--CCGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 93201 0.71 0.252158
Target:  5'- cCCGGGCCGgguuugUGUGcGCGGCCucaaGCCUcgGCg -3'
miRNA:   3'- aGGUCCGGCa-----GCAC-CGCCGG----CGGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.